Gene detail

Detail information of GWHGAAZE012601

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007219033.1	0	hypothetical protein PRUPE_ppa004553mg [Prunus persica]
Swissprot	tr\|A0T0Y9\|RR5_THAPS	3E-17	30S ribosomal protein S5, chloroplastic
trEMBL	tr\|M5X2B8\|M5X2B8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20232.1}
TAIR10	AT1G64880.1	3E-153	Ribosomal protein S5 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88334654	88339615	+
GWHAAZE00000003	mRNA	88334654	88339615	+
GWHAAZE00000003	exon	88334654	88335170	+
GWHAAZE00000003	exon	88335530	88336062	+
GWHAAZE00000003	exon	88337106	88337156	+
GWHAAZE00000003	exon	88337232	88337339	+
GWHAAZE00000003	exon	88338941	88339036	+
GWHAAZE00000003	exon	88339160	88339258	+
GWHAAZE00000003	exon	88339369	88339428	+
GWHAAZE00000003	exon	88339550	88339615	+
GWHAAZE00000003	CDS	88334654	88335170	+
GWHAAZE00000003	CDS	88335530	88336062	+
GWHAAZE00000003	CDS	88337106	88337156	+
GWHAAZE00000003	CDS	88337232	88337339	+
GWHAAZE00000003	CDS	88338941	88339036	+
GWHAAZE00000003	CDS	88339160	88339258	+
GWHAAZE00000003	CDS	88339369	88339428	+
GWHAAZE00000003	CDS	88339550	88339615	+

Transcript Sequence
>GWHTAAZE012615 ATGAGCAGCAGATCATCAAAATGGACTCGCCTTCTCTTCACCAAACTTCGACAACCCAAATACCCATCCCCCTCTCGATCCTTTTCCACCATTCTCAACATCAACCCTTTCCACTCCCACGTCCATAGCCATAGCCACCTCCCCTTTCCATCATTCTCCACCACCAATCGAACATTCTCCTCCGCTTCATCGGCAAGGACCATACAAGAGCTACTTGCTGAGGTTGAGAGGGACAAGCAGAGGGACAGAGACGAACGAAAAAGGGCCGGCCTTGATACTGCCGATATCGACGCCGAGGACCTAGAGGACTACATGGGTGTAGGCCCTCTCATCGACAAGCTCGAGAAGGAGAAACTCAAAGACCCTGGGGGCGACCTCAATCGCTACGAAGAACCTACCGATTCTGATTCCGACGATGACGAGAGGTTCACTTCGGAGGCTGTCGAGAAACGAACAGAAAACTTCGAGAAGAAGTACAACCGCTTTCAGGACCTCCTCAAGAACTTCACTGATGCTGAGACTCTTGATGATGCATACAAGTGGATGAATAAAATAGACAAATTCGAGCAAAAGCATTTCCGGCTTCGCCCAGAGTATAGGGTCATAGGAGAGTTGATGAACCGTTTGAAGGACGCCACTGGCAAGGACAAATTCCTTCTCCAGCACAAGCTAAATAGGGCAATTAGATTAGTGGAGTGGAAGGAAGCATACAACCCCAACGATCCGGCCAATTATGGACTCATCCAGCACGAACAGGTGGGACCCGATGCTGAGCTTGTCGAAAATGCTGGCTTTGAAAAGGAGAAGCAAATGATACAAGGGGCTGCCGGAGTGGATGACGATGACGAGGAGGAGTTTGATGACATGAAGGAGAAGGATGATATACTGTTAGAGAAGCTTAATGATATTGACAGGAAACTCGAAGAGAAGCTAGCAGACTTGGATCATACTTTCGGCAAGAAGGGTAAATTACTAGAAGAGGAGATCAGAGATCTGGCTGAAGAGAGGAACTCTCTCACTGAGAAGAAGAGAAGGCCCCTCTACAGGAAAGGTTTTGATGTGAAACTAATTGATGTCAATCGAACGTGTAAAGTTACAAAGGGAGGCCAAGTGGTCAAGTACACTGCTATGCTAGCTTGTGGAAACTATCATGGTGTTGTTGGTTTTGCAAAAGCCAAAGGGCCAGCAGTTCCTATTGCCCTTCAGAAGGCATATGAGAAATGCTTCCAGAATCTCCACTATGTTGAGAGGCATGAGGAGCATACAATTGCACATGCAGTCCAAACAGAATATAAGAAAACTAAGGTATATCTTTGGCCTGCCCGGACTCAAACGGGTATGAAAGCAGGAAGAACTGTCCAAACTATTTTGCATTTAGCTGGTTTCAAGAATGTGAAGTCTAAGGTTGTTGGGTCAAGGAATCCGCATAACACAGTTAAAGCTATTTTCAAGGCTCTAAATGCGATAGAAACACCGAAAGATGTTCAAGAGAAGTTTGGGCGAACCGTTGTTGAATCATACCTGCTGTGA

Network for GWHGAAZE012601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00333.21	Ribosomal_S5	352	416	1.70E-18
PF03719.16	Ribosomal_S5_C	430	497	5.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02988	RP-S5, MRPS5, rpsE	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003723	molecular_function	RNA binding
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.190
	SRR3591706	second leaf	34.623
	SRR3591707	mature leaf	24.137
	SRR3591708	Shoot apex	62.663
	SRR3591709	Stem	44.896
	SRR3591710	White floral bud	46.954
	SRR3591711	White flower	58.312
	SRR3591712	Green floral bud	52.481
	SRR3591713	Yellow flower	39.738
SRP173429	SRR8316895	Juvenile bud stage	29.244
	SRR8316896	Juvenile bud stage	39.189
	SRR8316897	Juvenile bud stage	20.870
	SRR8316894	Third green stage	17.372
	SRR8316900	Third green stage	48.564
	SRR8316901	Third green stage	42.250
	SRR8316898	Complete white stage	15.900
	SRR8316899	Complete white stage	42.245
	SRR8316903	Complete white stage	26.161
	SRR8316902	Silver flowering stage	16.228
	SRR8316904	Silver flowering stage	23.412
	SRR8316905	Silver flowering stage	12.155
	SRR8316906	Gold flowering stage	30.832
	SRR8316907	Gold flowering stage	32.052
	SRR8316908	Gold flowering stage	33.429
SRP132670	SRR6706286	Control	44.095
	SRR6706287	Light intensity 50%	44.205
	SRR6706288	Light intensity 20%	41.881
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.163
	CNS0095593	Slightly white alabastrum(diploid) 2	35.441
	CNS0095594	Slightly white alabastrum(diploid) 3	30.791
	CNS0095595	Whole white alabastrum(diploid) 2	28.376
	CNS0095596	Whole white alabastrum(diploid) 3	31.331
	CNS0095597	Whole white alabastrum(diploid) 4	20.709
	CNS0095598	Silvery flower (diploied) 1	32.189
	CNS0095599	Silvery flower (diploied) 2	29.083
	CNS0095600	Silvery flower (diploied) 3	32.481
	CNS0095601	Golden flower (diploid) 1	22.401
	CNS0095602	Golden flower (diploid) 2	30.464
	CNS0095603	Golden flower (diploid) 3	29.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.659
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.499
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.903
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.098
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.782
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.945
	CNS0095610	Silvery flower (tetraploid) 1	29.716
	CNS0095611	Silvery flower (tetraploid) 2	29.331
	CNS0095612	Silvery flower (tetraploid) 3	46.175
	CNS0095613	Golden flower (tetraploid) 1	13.763
	CNS0095614	Golden flower (tetraploid) 2	24.356
	CNS0095615	Golden flower (tetraploid) 3	17.580
CRA001975	CRR073297	Stem 1	61.378
	CRR073298	Stem 2	55.005
	CRR073299	Stem 3	51.819
	CRR073300	Leaf 1	56.950
	CRR073301	Leaf 2	50.862
	CRR073302	Leaf 3	46.667
	CRR073303	Juvenile bud 1	47.780
	CRR073304	Juvenile bud 2	29.250
	CRR073305	Juvenile bud 3	47.788
	CRR073306	Third green 1	19.836
	CRR073307	Third green 2	16.253
	CRR073308	Third green 3	24.863
	CRR073309	Second white 1	19.543
	CRR073310	Second white 2	24.540
	CRR073311	Second white 3	17.738
	CRR073312	Silver flowering 1	14.386
	CRR073313	Silver flowering 2	15.735
	CRR073314	Silver flowering 3	13.484
	CRR073315	Gold flowering 1	14.307
	CRR073316	Gold flowering 2	26.743
	CRR073317	Gold flowering 3	12.313
	CRR073318	Tawny withering 1	43.550
	CRR073319	Tawny withering 2	36.462
	CRR073320	Tawny withering 3	47.473