Gene detail

Detail information of GWHGAAZE012603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14026.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SRQ1\|C89A9_ARATH	6E-165	Cytochrome P450 89A9
trEMBL	tr\|A0A068V027\|A0A068V027_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP14026.1}
TAIR10	AT1G64940.1	1E-150	cytochrome P450, family 87, subfamily A, polypeptide 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88358119	88372780	+
GWHAAZE00000003	mRNA	88358119	88372780	+
GWHAAZE00000003	exon	88358119	88359633	+
GWHAAZE00000003	exon	88367617	88367756	+
GWHAAZE00000003	exon	88372162	88372780	+
GWHAAZE00000003	CDS	88358119	88359633	+
GWHAAZE00000003	CDS	88367617	88367756	+
GWHAAZE00000003	CDS	88372162	88372780	+

Transcript Sequence
>GWHTAAZE012617 ATGGAGACCTGGTCCATCCTTATCTTCTCCCTCTGCATCGCCGCCATCATCAACTGCCTCTTCTTATTCTTCAATAAAAATAATAAGAAGAAGAAGCAGCAGCTTCCACCGGGTCCCCTTTCATTTCCGGTGATCGGCAAATTGCTGTGGCTCACCAAATCGTTCGGCCAAATTGAACCCATCCTCCGGGATTTTAAACTCAAATACGGTCCCCTCATCTGCCTAAAGATTGGCTCTCGCCCCTCCATCTTCATCAGCAGCCACTCCCTAGCCCACCGTACCCTTGTCCAAAACGGTGCCGTATTTTCCGACCGACCCAAACCCCCTCCCACGGGCCAAATCACCTCCAGCAACCAGCACAACATCAGCTCAGCCTCCTACGGCCCCACCTGGCGCCTCTTCCGCCGCAACCTCACCTCTGAGATCCTCCATCCTTCCCGTGTCAAATCCTACTCCCACGCCCGCCTCTGGGTCCTCGATGTCCTCCTCCGCCGCCTCCACCAACAACCGGACTCTACTGCCGCCGCCGCCCCTGTCAAGGTGGTGGATCATCTGCAGTACGCCATGTTCTGCCTCCTTGTTCTCATGTGCTTCGGAGACAAGCTCCGCGAGGACCAGATCAAGGAAATTGAGAGGTGTCAGCGCCGTATGCTTCTCAGTTTCGGCCGCTACAACATACTCAATATCTTCCCGAGACTGGGGAAGATTCTGTTCAGGAACAAATGGAAGGAGTTCATGGCGATGCGCGACGAGCAGGAGCGCGTGTTGAGACCTCTCATTGAATCTCGAATAAGCTTCAAACAGCAAAAAAGGGAAGTCAGTGAGGAGGAGAGCGAGCGTGTGGTGGCGTATGTGGACACGCTGCTGGATCTGCAGCTGCCGGAGGGAGACGGGAAGAGGAAGCTGACTGAGGGAGAGATGGTGAGTTTGTGCAGTGAGTTTCTCAACGCGGGGACAGATACTACGTCCACTGCTTTGCAGTGGATACTGGCCAATATGGTCAAGTATCCCCAAATTCAATCCAAGCTGTACGAAGAGATCGAGGGAGTGATGGGTCCGGCGCCACCCCCACCACCAGGGGAGGAATTGGGAATTGGTTTAAGAGTGGTGAGGGAAGAAGATGTGCAGAAGATGCCATACTTGAAGGCGGTTGTGTTGGAGGGGCTGAGGAGGCACCCGCCAGGGCACTTTGTGCTGCCGCACTCGGTGAGCGAGGAAGTGGAGTTGGAAGGGTACGTGGTGCCTAAAAACGCCGTGATCAATTTTATGGTGGCGGATTTGGGGTGGGACCCAAAGGTGTGGAAAGATCCGATGGAGTTCAAGCCTGAGAGGTTTATAAATAGTAAGGATGATGGAGAGGTGTTTGATATAACAGGGAACAAGGAGATAAAGATGATGCCATTTGGGGCAGGGAGGAGGATATGCCCAGGTTTTGGTTTGGCTATGCTTCACTTGGAATACTTTGTGGCCAATTTGATTTGGTACTATGAGTGGAAGGGCGTTGAAGGAGAAGAGGCTGCGAATAATCGTGCACCACAAGGAGCAGCTGCAGCTGCAAACCAGGCAGAGCTCCAGATGGCATATCAAGACGCTTGGCGTGTCTGCCATCCCGACTTCAAGCGCCCATTCTCCTCTCTTGAAGATGCTTGCGAAAGGCTACTACCTTATCATGTGGTGGCCGACTATGAGGCCGAGGAAGATGATAGAATTCTGGACTCGGATACTACAGGGCAGATGCTTTCCCGGTCCCAGCAGTGGGACAACAATATTGCTGCCAAAGTTGCGGAATTCACCTCTACCTTTGAGAAACAAGTTCACGCTTTTAATATAATATGCCGGAAGCGGGCTTGCGGAGAATTCAGATCGGAGGAGAGGCTAATGGTCGAGCAGGCTCTACTGCAGGAAGAGAGGAGAGCCCTGGTGGAGATAAGGGCAGAGATGGATTCACGGCAGAAGGCAGGGAGAGAGGCTCGTGAGGCCAACTTGAGAATGGCAGCCATGGCGCAGGCCGAGCAGGCTAGGGCCGAGTCTCAGGCTCACGCGGAGATGATGGCTAGGGCACCGATACGAGCCAATGCACTAGGAGGGTCCCAAGGGAGCAACGTTGGGATGGGGGTTGGTGAGCAGGAGCATGAAGTGCCGGAGGAGATTATGAATGGATGGGCGAATAATCCTCAGAGAGAAGAGAAAGAGCCGTCAGAGGATTTTCTGAATGACGAGGAGACGGATAACGGTGATAATGGCGTTGAAGATTTCGATCTAAACACTAGATAA

Network for GWHGAAZE012603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	36	511	2.60E-91
PF15249.7	GLTSCR1	530	644	1.60E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.151
	SRR3591706	second leaf	18.548
	SRR3591707	mature leaf	31.615
	SRR3591708	Shoot apex	26.690
	SRR3591709	Stem	47.138
	SRR3591710	White floral bud	207.164
	SRR3591711	White flower	181.606
	SRR3591712	Green floral bud	75.022
	SRR3591713	Yellow flower	155.255
SRP173429	SRR8316895	Juvenile bud stage	27.143
	SRR8316896	Juvenile bud stage	45.490
	SRR8316897	Juvenile bud stage	17.146
	SRR8316894	Third green stage	14.189
	SRR8316900	Third green stage	35.259
	SRR8316901	Third green stage	43.895
	SRR8316898	Complete white stage	53.740
	SRR8316899	Complete white stage	75.937
	SRR8316903	Complete white stage	91.445
	SRR8316902	Silver flowering stage	56.154
	SRR8316904	Silver flowering stage	65.887
	SRR8316905	Silver flowering stage	44.099
	SRR8316906	Gold flowering stage	127.540
	SRR8316907	Gold flowering stage	126.102
	SRR8316908	Gold flowering stage	130.555
SRP132670	SRR6706286	Control	79.465
	SRR6706287	Light intensity 50%	71.880
	SRR6706288	Light intensity 20%	60.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.542
	CNS0095593	Slightly white alabastrum(diploid) 2	28.295
	CNS0095594	Slightly white alabastrum(diploid) 3	42.497
	CNS0095595	Whole white alabastrum(diploid) 2	25.522
	CNS0095596	Whole white alabastrum(diploid) 3	21.030
	CNS0095597	Whole white alabastrum(diploid) 4	26.917
	CNS0095598	Silvery flower (diploied) 1	65.908
	CNS0095599	Silvery flower (diploied) 2	45.708
	CNS0095600	Silvery flower (diploied) 3	141.745
	CNS0095601	Golden flower (diploid) 1	48.853
	CNS0095602	Golden flower (diploid) 2	125.951
	CNS0095603	Golden flower (diploid) 3	120.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.441
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.362
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.709
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.565
	CNS0095610	Silvery flower (tetraploid) 1	87.846
	CNS0095611	Silvery flower (tetraploid) 2	89.851
	CNS0095612	Silvery flower (tetraploid) 3	159.685
	CNS0095613	Golden flower (tetraploid) 1	89.435
	CNS0095614	Golden flower (tetraploid) 2	95.442
	CNS0095615	Golden flower (tetraploid) 3	145.582
CRA001975	CRR073297	Stem 1	58.638
	CRR073298	Stem 2	69.359
	CRR073299	Stem 3	82.277
	CRR073300	Leaf 1	48.994
	CRR073301	Leaf 2	47.617
	CRR073302	Leaf 3	47.034
	CRR073303	Juvenile bud 1	47.934
	CRR073304	Juvenile bud 2	67.914
	CRR073305	Juvenile bud 3	66.769
	CRR073306	Third green 1	122.466
	CRR073307	Third green 2	92.994
	CRR073308	Third green 3	100.282
	CRR073309	Second white 1	132.350
	CRR073310	Second white 2	102.598
	CRR073311	Second white 3	107.487
	CRR073312	Silver flowering 1	145.287
	CRR073313	Silver flowering 2	195.151
	CRR073314	Silver flowering 3	125.186
	CRR073315	Gold flowering 1	31.424
	CRR073316	Gold flowering 2	39.078
	CRR073317	Gold flowering 3	55.970
	CRR073318	Tawny withering 1	47.850
	CRR073319	Tawny withering 2	37.702
	CRR073320	Tawny withering 3	43.124