Gene detail

Detail information of GWHGAAZE012604

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094670.1	0	PREDICTED: probable tocopherol O-methyltransferase, chloroplastic [Sesamum indicum]
Swissprot	tr\|Q6ZIK0\|GTOMC_ORYSJ	1E-170	Probable tocopherol O-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|A0A022R4C5\|A0A022R4C5_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU34443.1}
TAIR10	AT1G64970.1	5E-120	gamma-tocopherol methyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88374688	88379796	-
GWHAAZE00000003	mRNA	88374688	88379796	-
GWHAAZE00000003	exon	88379565	88379796	-
GWHAAZE00000003	exon	88377017	88377186	-
GWHAAZE00000003	exon	88376200	88376304	-
GWHAAZE00000003	exon	88375831	88376034	-
GWHAAZE00000003	exon	88374973	88375075	-
GWHAAZE00000003	exon	88374688	88374791	-
GWHAAZE00000003	CDS	88379565	88379796	-
GWHAAZE00000003	CDS	88377017	88377186	-
GWHAAZE00000003	CDS	88376200	88376304	-
GWHAAZE00000003	CDS	88375831	88376034	-
GWHAAZE00000003	CDS	88374973	88375075	-
GWHAAZE00000003	CDS	88374688	88374791	-

Transcript Sequence
>GWHTAAZE012618 ATGACGACGACGGCGGCTTCAGCGTATGCGAAGGAGGTGGAGGTGGAGACTAGTCCGCTGAAGAAAGGAATAGCAGAGTTCTACGATGAATCATCCGGGATATGGGAGGATATATGGGGGGAGCATATGCACCACGGCTTCTACGATCCCGATGCGGATGTCTCTCTCTCCGATCACCGTTCCGCTCAGATCCGTATGGTCGAAGAGTCCCTCCGTTTCGCCTCCGTCTCCGATGACCCAGTGAAGAAACCCAAGAGTATAGTTGATGTTGGTTGTGGGATAGGTGGTAGTTCGAGGTATCTAGCTACGAAGTATGGTGCCCAATGCAAAGGCATCACCCTTAGCCCTGTTCAAGCCCAAAGAGCTCAAGCTCTTGCTAGTGCTCAAGGATTAGCTGACAAGGTTTCTTTTCAAGTTGCAGATGCTTTGAATCAACCATTTCCTGATGGACAATTTGACCTGGTCTGGTCCATGGAGAGTGGAGAACACATGCCTGACAAAACAAAGTTTGTTGGCGAGTTGGTACGAGTGGCAGCTCCTGGGGCCACGATAATCATAGTTACATGGTGCCATAGGGATCTCTCCCCTTCTGAAGAATCATTGAAGACTGATGAGAAAGAGCTACTGAACAAGATATGTGATTCTTTCTATCTTCCAGCCTGGTGTTCTACTGCTGATTATGTAAAGTTGCTTCAGTCCCTTTCTCTTGAGGATATCAAGGCAGAGGATTGGTCCAAGTCCGTTGCCCCATTTTGGCCGGCAGTGATCAAATCAGCATTGTCATGGAAGGGTGTCACCTCTTTGTTTCGAAGTGGATGGAAGACAATAAGAGGGGCTCTGGCAATGCCGCTGATGATCCAAGGGTACAAGAAGGATTTAGTCAAATTTTCTATCATTACTTGCCGGAAGCCTGAGTAA

Network for GWHGAAZE012604

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08241.13	Methyltransf_11	88	186	3.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05928	E2.1.1.95	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0032259	biological_process	methylation
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.944
	SRR3591706	second leaf	152.401
	SRR3591707	mature leaf	275.078
	SRR3591708	Shoot apex	104.972
	SRR3591709	Stem	58.100
	SRR3591710	White floral bud	48.030
	SRR3591711	White flower	34.374
	SRR3591712	Green floral bud	73.704
	SRR3591713	Yellow flower	12.285
SRP173429	SRR8316895	Juvenile bud stage	77.550
	SRR8316896	Juvenile bud stage	84.715
	SRR8316897	Juvenile bud stage	36.157
	SRR8316894	Third green stage	34.447
	SRR8316900	Third green stage	115.207
	SRR8316901	Third green stage	111.876
	SRR8316898	Complete white stage	44.174
	SRR8316899	Complete white stage	126.144
	SRR8316903	Complete white stage	51.608
	SRR8316902	Silver flowering stage	24.867
	SRR8316904	Silver flowering stage	25.165
	SRR8316905	Silver flowering stage	15.086
	SRR8316906	Gold flowering stage	46.942
	SRR8316907	Gold flowering stage	46.000
	SRR8316908	Gold flowering stage	37.699
SRP132670	SRR6706286	Control	111.611
	SRR6706287	Light intensity 50%	111.448
	SRR6706288	Light intensity 20%	128.940
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.596
	CNS0095593	Slightly white alabastrum(diploid) 2	60.911
	CNS0095594	Slightly white alabastrum(diploid) 3	59.905
	CNS0095595	Whole white alabastrum(diploid) 2	59.741
	CNS0095596	Whole white alabastrum(diploid) 3	63.924
	CNS0095597	Whole white alabastrum(diploid) 4	48.618
	CNS0095598	Silvery flower (diploied) 1	71.202
	CNS0095599	Silvery flower (diploied) 2	72.721
	CNS0095600	Silvery flower (diploied) 3	69.787
	CNS0095601	Golden flower (diploid) 1	57.899
	CNS0095602	Golden flower (diploid) 2	66.233
	CNS0095603	Golden flower (diploid) 3	66.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.625
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	93.973
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.263
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.037
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.447
	CNS0095610	Silvery flower (tetraploid) 1	41.283
	CNS0095611	Silvery flower (tetraploid) 2	53.009
	CNS0095612	Silvery flower (tetraploid) 3	47.359
	CNS0095613	Golden flower (tetraploid) 1	16.864
	CNS0095614	Golden flower (tetraploid) 2	26.009
	CNS0095615	Golden flower (tetraploid) 3	13.567
CRA001975	CRR073297	Stem 1	136.396
	CRR073298	Stem 2	126.308
	CRR073299	Stem 3	161.482
	CRR073300	Leaf 1	150.308
	CRR073301	Leaf 2	147.745
	CRR073302	Leaf 3	190.264
	CRR073303	Juvenile bud 1	157.678
	CRR073304	Juvenile bud 2	160.933
	CRR073305	Juvenile bud 3	118.776
	CRR073306	Third green 1	104.483
	CRR073307	Third green 2	68.717
	CRR073308	Third green 3	76.259
	CRR073309	Second white 1	43.079
	CRR073310	Second white 2	41.353
	CRR073311	Second white 3	31.493
	CRR073312	Silver flowering 1	29.670
	CRR073313	Silver flowering 2	34.509
	CRR073314	Silver flowering 3	30.367
	CRR073315	Gold flowering 1	186.810
	CRR073316	Gold flowering 2	223.136
	CRR073317	Gold flowering 3	196.990
	CRR073318	Tawny withering 1	78.400
	CRR073319	Tawny withering 2	69.121
	CRR073320	Tawny withering 3	73.173