Gene detail

Detail information of GWHGAAZE012606

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN71104.1	3.935E-117	hypothetical protein VITISV_000039 [Vitis vinifera]
Swissprot	tr\|Q6E7H0\|ORC3_ARATH	3E-78	Origin of replication complex subunit 3 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|A5CBJ7\|A5CBJ7_VITVI	1E-117	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71104.1}
TAIR10	AT5G16690.1	6E-68	origin recognition complex subunit 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88406516	88408275	-
GWHAAZE00000003	mRNA	88406516	88408275	-
GWHAAZE00000003	exon	88406516	88406734	-
GWHAAZE00000003	exon	88406845	88407014	-
GWHAAZE00000003	exon	88407504	88407678	-
GWHAAZE00000003	exon	88407793	88407987	-
GWHAAZE00000003	exon	88408216	88408275	-
GWHAAZE00000003	CDS	88408216	88408275	-
GWHAAZE00000003	CDS	88407793	88407987	-
GWHAAZE00000003	CDS	88407504	88407678	-
GWHAAZE00000003	CDS	88406845	88407014	-
GWHAAZE00000003	CDS	88406516	88406734	-

Transcript Sequence
>GWHTAAZE012620 ATGGCGCCATCTGCAGTTGATGATTCTACAGAACCCCAAAATACAGAAAATGATCTTCAGCCCTTTTTCGTCTTTCACAAAGCTTCCCCTCGGAAACCCGAGAAGAAACCCTCTGGAAAGACCCGAAGAAGGATTGAACTGTCCCCTGACAAAATAGAGGCCCACGGTGTGGATGGTTTCGAGGAACAACACTACGAGAACTTGCGAATGGATGCATTCCAGTGTGTATGGTCCAAAATTGAGTCGTCCATCAAGGATGTTTTAAGGAAGATAAACATTGTTGTATTCGATGAAATTGATCGTTGGGTTCACGAATCATTTGTCGCAATCCGTTCATGTGGGACACCGGATCTCGCTAAAGCCACTCGATCTTACCCTATCATAACCGATGTCATATCTAAACAGCTGTTCACTGGTCTAATATTCTGCAAGAACATGGAATTTGTTGACAATCTAGTAACATTTGCGGACCTTGGTATGTACTTAAAATCTCATGGATGTCATGTGGCTAACCTTTCATCACTGGACTTCTCGGCCAAGAATGGAATTGGTGGCTGTCTTAGAAGCTTATTAAGACAATTTCTAATGGTTAGCATCGATGCAGCTGATATAACCACATTGGCATCATGGTATGCCGAGCAAGGGAACCATAAGGCTCCAGTGGTTGTGATTATTGATGATATGGAGAGGTGTTGTGGGTCTGTGTTGTCTGATTTCATCCTCATGTTGAGGTATAGTAGCTCATTTGTCTACCAGCAGGGCTCCACCATGGTTGCTCAGCATAATGATTTCATTCACATTTTTGCTTTCCACAACTGA

Network for GWHGAAZE012606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07034.12	ORC3_N	61	244	2.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02605	ORC3	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005664	cellular_component	nuclear origin of replication recognition complex
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.931
	SRR3591706	second leaf	0.801
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	5.164
	SRR3591709	Stem	0.920
	SRR3591710	White floral bud	0.565
	SRR3591711	White flower	0.517
	SRR3591712	Green floral bud	0.416
	SRR3591713	Yellow flower	0.494
SRP173429	SRR8316895	Juvenile bud stage	1.196
	SRR8316896	Juvenile bud stage	1.558
	SRR8316897	Juvenile bud stage	0.767
	SRR8316894	Third green stage	0.204
	SRR8316900	Third green stage	1.439
	SRR8316901	Third green stage	0.707
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.482
	SRR8316903	Complete white stage	0.041
	SRR8316902	Silver flowering stage	0.059
	SRR8316904	Silver flowering stage	0.236
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.172
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.585
	SRR6706287	Light intensity 50%	0.873
	SRR6706288	Light intensity 20%	0.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.542
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.416
	CNS0095595	Whole white alabastrum(diploid) 2	0.297
	CNS0095596	Whole white alabastrum(diploid) 3	0.092
	CNS0095597	Whole white alabastrum(diploid) 4	0.736
	CNS0095598	Silvery flower (diploied) 1	1.051
	CNS0095599	Silvery flower (diploied) 2	0.576
	CNS0095600	Silvery flower (diploied) 3	0.316
	CNS0095601	Golden flower (diploid) 1	0.446
	CNS0095602	Golden flower (diploid) 2	0.284
	CNS0095603	Golden flower (diploid) 3	0.020
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.273
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.436
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.360
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.669
	CNS0095610	Silvery flower (tetraploid) 1	0.097
	CNS0095611	Silvery flower (tetraploid) 2	0.230
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.042
CRA001975	CRR073297	Stem 1	2.100
	CRR073298	Stem 2	2.328
	CRR073299	Stem 3	1.582
	CRR073300	Leaf 1	0.718
	CRR073301	Leaf 2	0.607
	CRR073302	Leaf 3	0.082
	CRR073303	Juvenile bud 1	0.903
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.410
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.199
	CRR073308	Third green 3	0.150
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.935
	CRR073316	Gold flowering 2	0.559
	CRR073317	Gold flowering 3	0.206
	CRR073318	Tawny withering 1	1.466
	CRR073319	Tawny withering 2	1.239
	CRR073320	Tawny withering 3	0.636