Gene detail

Detail information of GWHGAAZE012610

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081821.1	3.1323E-168	PREDICTED: alcohol dehydrogenase-like 1 [Sesamum indicum]
Swissprot	tr\|Q0V7W6\|ADHL5_ARATH	4E-91	Alcohol dehydrogenase-like 5
trEMBL	tr\|W8JWV8\|W8JWV8_CATRO	9E-167	8-hydroxygeraniol oxidoreductase {ECO:0000313\|EMBL:AHK60836.1}
TAIR10	AT4G22110.2	2E-55	GroES-like zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88460998	88465625	-
GWHAAZE00000003	mRNA	88460998	88465625	-
GWHAAZE00000003	exon	88465569	88465625	-
GWHAAZE00000003	exon	88462835	88462872	-
GWHAAZE00000003	exon	88462204	88462612	-
GWHAAZE00000003	exon	88461684	88461929	-
GWHAAZE00000003	exon	88461229	88461387	-
GWHAAZE00000003	exon	88460998	88461060	-
GWHAAZE00000003	CDS	88465569	88465625	-
GWHAAZE00000003	CDS	88462835	88462872	-
GWHAAZE00000003	CDS	88462204	88462612	-
GWHAAZE00000003	CDS	88461684	88461929	-
GWHAAZE00000003	CDS	88461229	88461387	-
GWHAAZE00000003	CDS	88460998	88461060	-

Transcript Sequence
>GWHTAAZE012624 ATGCTCTACGCTAGTCTCTGCCACACTGACCTGCTTTGTTGCAATGGCCTTCCCCTTCCTTTGTTTCCTCGAATTCCAGGGCACGAAGGTGTTGGAGAAGTAGAGAGCGTTGGTGAAAAAGTGGTAAATGTGAAAGAAGGGGATATAGTGATGCCATTGTACTTGGGGGAGTGCAAGGAATGTGCGAATTGCAAGTCGGAAAAGACAAACTTGTGCCATACTTATTCCTTGGGTTTCAGTGGCCTAATGCCATCCGATGGCACTTCAAGAATGTCGACTGCTAGTGGCGAAAAAATTTACCATCACTTTAGCTGCTCCACCTGGTCCGAGTACATTGTTATAGACTCCAATTTTCTCCTTAAGGTTGACCCCAGGCTACCTCTCCCTCATGCTAGCTTCCTTTCTTGCGGTTTCACCACTGGTTTTGGTGCGGCCTGGAAGGAAGCCAATGTCAGAAAGGGCTCCACCGTCGCCGTTTTGGGTCTCGGTGCTGTTGGACTTGGGGCTATAGCGGGAGCTCGAGCAGAAGGGGCCACGAAAATAATTGGGGTGGACATAAATGAGAGGAAGAGTGAAAAGGGAAAGGCATTCGGGATGACTGATTTTATAAATCCTAAGAATTCGGGTACATCAGTGTCAGAATTGATCAAAGTGGCAACTGGAGGACTGGGAGCGGACTACTGTATTGAGTGTACCGGAGTACCGTCGTTGCTCAACGAGGCCACTGAAGCCACTGAAGCCACAAAAGTGGGCTTGGGGAAAGTGGTGCTGGTTGGTGCAGGACTAGAGTCGAGCGGGGTTATCAACTTTGTTCCACTATTGCTTGGTCGTACGGTCAAGGGCTGCATCTATGGTGGAGTCAGAATCCACTCTGATCTTCCTCTTATTATCAACAGGTGCATTAACAAGGAGATTGAACTAGATGAGCTTTTGACCCACCAAGTATCAATACAAGAAATAAACGAAGCACTG

Network for GWHGAAZE012610

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	3	94	2.00E-19
PF00107.27	ADH_zinc_N	164	286	2.60E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00121	frmA, ADH5, adhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Fatty acid degradation	map00071
		Tyrosine metabolism	map00350
		Retinol metabolism	map00830
		Chloroalkane and chloroalkene degradation	map00625
		Naphthalene degradation	map00626
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.363
	SRR3591706	second leaf	0.079
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.208
	SRR3591709	Stem	0.537
	SRR3591710	White floral bud	0.838
	SRR3591711	White flower	0.895
	SRR3591712	Green floral bud	0.206
	SRR3591713	Yellow flower	1.049
SRP173429	SRR8316895	Juvenile bud stage	0.592
	SRR8316896	Juvenile bud stage	0.868
	SRR8316897	Juvenile bud stage	0.007
	SRR8316894	Third green stage	0.202
	SRR8316900	Third green stage	0.313
	SRR8316901	Third green stage	0.277
	SRR8316898	Complete white stage	0.130
	SRR8316899	Complete white stage	0.576
	SRR8316903	Complete white stage	0.105
	SRR8316902	Silver flowering stage	0.210
	SRR8316904	Silver flowering stage	0.221
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.226
	SRR8316907	Gold flowering stage	0.091
	SRR8316908	Gold flowering stage	0.219
SRP132670	SRR6706286	Control	0.313
	SRR6706287	Light intensity 50%	0.393
	SRR6706288	Light intensity 20%	0.298
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.152
	CNS0095593	Slightly white alabastrum(diploid) 2	0.286
	CNS0095594	Slightly white alabastrum(diploid) 3	0.098
	CNS0095595	Whole white alabastrum(diploid) 2	0.144
	CNS0095596	Whole white alabastrum(diploid) 3	0.130
	CNS0095597	Whole white alabastrum(diploid) 4	0.260
	CNS0095598	Silvery flower (diploied) 1	0.092
	CNS0095599	Silvery flower (diploied) 2	0.675
	CNS0095600	Silvery flower (diploied) 3	0.659
	CNS0095601	Golden flower (diploid) 1	0.062
	CNS0095602	Golden flower (diploid) 2	0.402
	CNS0095603	Golden flower (diploid) 3	0.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.168
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.040
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.233
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.126
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.110
	CNS0095610	Silvery flower (tetraploid) 1	0.186
	CNS0095611	Silvery flower (tetraploid) 2	0.175
	CNS0095612	Silvery flower (tetraploid) 3	0.382
	CNS0095613	Golden flower (tetraploid) 1	0.330
	CNS0095614	Golden flower (tetraploid) 2	0.221
	CNS0095615	Golden flower (tetraploid) 3	0.289
CRA001975	CRR073297	Stem 1	0.218
	CRR073298	Stem 2	0.431
	CRR073299	Stem 3	0.005
	CRR073300	Leaf 1	0.396
	CRR073301	Leaf 2	0.380
	CRR073302	Leaf 3	0.116
	CRR073303	Juvenile bud 1	0.104
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.070
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.211
	CRR073312	Silver flowering 1	0.007
	CRR073313	Silver flowering 2	0.318
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.171
	CRR073316	Gold flowering 2	0.410
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.455
	CRR073319	Tawny withering 2	0.065
	CRR073320	Tawny withering 3	0.260