Gene detail

Detail information of GWHGAAZE012616

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075778.1	0	PREDICTED: transducin beta-like protein 3 [Sesamum indicum]
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	3E-26	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|A0A061EYF5\|A0A061EYF5_THECC	0	Transducin family protein / WD-40 repeat family protein {ECO:0000313\|EMBL:EOY10125.1}
TAIR10	AT5G16750.1	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88571838	88581459	-
GWHAAZE00000003	mRNA	88571838	88581459	-
GWHAAZE00000003	exon	88571838	88572188	-
GWHAAZE00000003	exon	88572281	88572455	-
GWHAAZE00000003	exon	88572698	88572807	-
GWHAAZE00000003	exon	88573593	88573712	-
GWHAAZE00000003	exon	88573848	88573924	-
GWHAAZE00000003	exon	88574017	88574263	-
GWHAAZE00000003	exon	88574493	88574649	-
GWHAAZE00000003	exon	88575286	88575404	-
GWHAAZE00000003	exon	88575684	88575818	-
GWHAAZE00000003	exon	88577027	88577312	-
GWHAAZE00000003	exon	88577472	88577689	-
GWHAAZE00000003	exon	88579228	88579410	-
GWHAAZE00000003	exon	88581163	88581459	-
GWHAAZE00000003	CDS	88581163	88581459	-
GWHAAZE00000003	CDS	88579228	88579410	-
GWHAAZE00000003	CDS	88577472	88577689	-
GWHAAZE00000003	CDS	88577027	88577312	-
GWHAAZE00000003	CDS	88575684	88575818	-
GWHAAZE00000003	CDS	88575286	88575404	-
GWHAAZE00000003	CDS	88574493	88574649	-
GWHAAZE00000003	CDS	88574017	88574263	-
GWHAAZE00000003	CDS	88573848	88573924	-
GWHAAZE00000003	CDS	88573593	88573712	-
GWHAAZE00000003	CDS	88572698	88572807	-
GWHAAZE00000003	CDS	88572281	88572455	-
GWHAAZE00000003	CDS	88571838	88572188	-

Transcript Sequence
>GWHTAAZE012630 ATGGCTTCTGTAACCTTGAAGAAGAACTACCGGTCCGTTCAGTCTCTGCAACAATTCTACTCCGGCGGACCCTATGCCGCCTCCTCGGACGGTTCTTTCCTCGCCTGTGCTTGCGATGACACTATCAAGATTGTCGATTCTTCGAACGCTTCCATTAAATCCACCATTCAAGGTGATTCGGAGCCCGTCACTGCTCTCGCTCTAAGCCCCAATGATAAATTCCTCTTCTCTTCCAGCCACAGTCGACAAATTAGGGTTTGGGACCTATCGACACTCAAATGTTTACGCTCTTGGAAGGGACATGAAGGGCCTGTGATGGCGATGGCTTGTGATGCCTCTGGTGGATTGCTGGCAACTGCAGGGGCTGATAGGAAAGTGCTTGTGTGGGATGTTGATGGTGGTTTCTGCACGCATTACTTCAAAGGGCACAAGGGAGTTGTGACTTGTATTATGTTCCATCCCGACCTGAATAAACTACTTATTGTATACTTCTGGAATCTTCATGACTATGGCTTCAAGAGTTCGATACCAATATATGAGGCAGTTGAAGCAGTGTGCGTGATTAGTCCTACGTCTCCTTTCACTTCATGTTTGGCTTCATGCACAAAGCAGCGTGGGAAGAAAAAAAGTGATTCACCTGTCATCTATTTTGTCACCGTTGGTGAACGTGGGGTTGTACGTATATGGGATTCTAATAGCTCAATGTGCCTTTTTGAGCAGAAGTCCTCTGATGTTACTGTTGGCTCAGACGGGGAAGACTTGAAAAGAGGCTTCACTTCTGCCGTGATGTTGCCCTCTGATCAAGGATTGCTCTGTGTTACTGCTGACCAGCAATTTCTGTTTTATTCCCTAACGGAATATCCTGAAGGTTCTTTGGAGTTAATCCTGAGCAAAAGGCTTGTAGGATACAATGAAGAGATAGTGGATATGAAGTTTTTGGGTGAGGAAGAACAATTTCTTGCCGTTGCTACAAGTGTTGAGCAGGTACGGGTGTATGACCTTGCATCCCTGTCATGTTCCTATGTATTGGCTGGTCATACTGACATTGTTCTGTGCCTTGACACCTGTGTATCTACCTCTGGAAGAACACTAATTGTAACTGGTAGCAAGGATAACTCTGTTAGGTTATGGGATTCAGATAGCCAACGTTGCATTGGAGTTGGAATTGGTCATATGGGAGCTGTTGGAGCTGTTGCTTTTTCAAAGAGAGGGCAGAACTTCTTTGTTAGTGGTAGTAGTGATCGTACTCTGAAGGTGTGGAGTGTAGATGGCCTCTCAGATGATGTGGGAGAAGCTTCTAGTTTGAAAGCAAAGGCAGTTGTGGCAGCCCACGATAAGGATATAAATTCTTTGGCTGTTGCACCGAATGACCGTCTTGTTTGTAGTGGTTCCCAGGATCGCACTGCTTGCATATGGCGGCTTCCAGATCTAGTCTCAGTGATTGTTCTTAAAGGGCACAAGAGGGGGATTTGGTCTGTAGAGTTTTCTCCGGTTGATCAATGTGTTATAACAGCATCCGGAGATAAGACCATAAAGATATGGGCTATTTCTGATGGTTCATGTTTAAAAACTTTTGAAGGACATACATCAAGTGTGTTTAGAGCGTCATTCCTTACTCGTGGGACCCAGTTTATTTCTTGTGGTGCTGATGGTTTGGTAAAGTTATGGACAGTAAATACCAATGAGTGTATTGCAACATTTGATCAGCATGAGGACAAGGTTTGGGCCTTAGCCGTTGGAAAGAAGACAGAAATGCTTGCAACTGGTGGCAGCGATGCTGTTATTAATTTGTGGCATGACTCTACTGCTGCTGAGAAAGAAGAAGCTTTTCGCAAAGAAGAGGAAGGTGTTTTAAAAGGGCAAGAGCTAGAAAATGCAATATCAGATGCAGAGTACTCTAAAGCAATCCAGATTGCATTTGAGCTTCGTAGACCTCATAAACTTTTTGAGAAGAGAGATGCTGAATATCAAGTTGAGAAAGCTCTACGAGCCCTTGGCAATGAAGAATTTCGTCAACTTTTGGAATATGTTCGAGAATGGAATACAAAGCCAAAGCTATGTCATGTTGCGCATTTTGTGCTTTTCCGTATTTTCAGCATCCTTCCGCCGACAGATATTGTCGAGATAAAAGGCATAGGAGAAGTACTTGAAGGGCTAATCCCATATTCACAAAGGCATTTCAGTAGGATAGATAGACTGGAAAGAAGCACATTCCTTTTGGACTATACTCTCACGGGAATGTCCGTCATCGATCCACAAGACAATTACTCTGCTGAGGATGCCAAGCAGCTCAAGGAACAGTTACCAGAAACTGCAGCCAAGGATCATCAAGAACAAGACATTGAAGATCCGAAAGAGAATGTTAAATCTTCAAAGAAGCGAAAACCACGCAAATCAAAAGATGTTGCACATAAGAAAAAAGTAAAGGGTGCAGTGGCTTTTGTGAATGCTTCAGCTATTTCATCACAGGCCTAA

Network for GWHGAAZE012616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	57	88	0.0013
PF00400.33	WD40	93	130	3.00E-05
PF00400.33	WD40	338	378	2.00E-05
PF00400.33	WD40	383	421	0.00025
PF00400.33	WD40	442	472	0.00019
PF00400.33	WD40	481	514	4.20E-05
PF00400.33	WD40	519	556	0.00017
PF00400.33	WD40	562	598	0.095
PF08625.12	Utp13	621	747	2.10E-35

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14555	UTP13, TBL3	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0032040	cellular_component	small-subunit processome
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.544
	SRR3591706	second leaf	4.362
	SRR3591707	mature leaf	6.802
	SRR3591708	Shoot apex	12.538
	SRR3591709	Stem	7.941
	SRR3591710	White floral bud	5.374
	SRR3591711	White flower	13.232
	SRR3591712	Green floral bud	12.399
	SRR3591713	Yellow flower	6.362
SRP173429	SRR8316895	Juvenile bud stage	9.053
	SRR8316896	Juvenile bud stage	11.569
	SRR8316897	Juvenile bud stage	6.497
	SRR8316894	Third green stage	4.727
	SRR8316900	Third green stage	12.053
	SRR8316901	Third green stage	10.093
	SRR8316898	Complete white stage	0.919
	SRR8316899	Complete white stage	9.980
	SRR8316903	Complete white stage	2.473
	SRR8316902	Silver flowering stage	2.309
	SRR8316904	Silver flowering stage	3.504
	SRR8316905	Silver flowering stage	0.965
	SRR8316906	Gold flowering stage	5.653
	SRR8316907	Gold flowering stage	4.994
	SRR8316908	Gold flowering stage	6.130
SRP132670	SRR6706286	Control	8.582
	SRR6706287	Light intensity 50%	9.914
	SRR6706288	Light intensity 20%	10.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.669
	CNS0095593	Slightly white alabastrum(diploid) 2	10.325
	CNS0095594	Slightly white alabastrum(diploid) 3	7.159
	CNS0095595	Whole white alabastrum(diploid) 2	7.337
	CNS0095596	Whole white alabastrum(diploid) 3	6.471
	CNS0095597	Whole white alabastrum(diploid) 4	5.745
	CNS0095598	Silvery flower (diploied) 1	8.568
	CNS0095599	Silvery flower (diploied) 2	7.562
	CNS0095600	Silvery flower (diploied) 3	5.801
	CNS0095601	Golden flower (diploid) 1	7.976
	CNS0095602	Golden flower (diploid) 2	6.418
	CNS0095603	Golden flower (diploid) 3	4.990
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.955
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.600
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.148
	CNS0095610	Silvery flower (tetraploid) 1	10.878
	CNS0095611	Silvery flower (tetraploid) 2	12.093
	CNS0095612	Silvery flower (tetraploid) 3	5.430
	CNS0095613	Golden flower (tetraploid) 1	4.829
	CNS0095614	Golden flower (tetraploid) 2	8.029
	CNS0095615	Golden flower (tetraploid) 3	4.409
CRA001975	CRR073297	Stem 1	10.178
	CRR073298	Stem 2	8.589
	CRR073299	Stem 3	6.600
	CRR073300	Leaf 1	7.795
	CRR073301	Leaf 2	7.990
	CRR073302	Leaf 3	4.754
	CRR073303	Juvenile bud 1	6.372
	CRR073304	Juvenile bud 2	2.402
	CRR073305	Juvenile bud 3	8.218
	CRR073306	Third green 1	0.384
	CRR073307	Third green 2	0.290
	CRR073308	Third green 3	0.737
	CRR073309	Second white 1	1.121
	CRR073310	Second white 2	2.210
	CRR073311	Second white 3	2.435
	CRR073312	Silver flowering 1	1.127
	CRR073313	Silver flowering 2	0.945
	CRR073314	Silver flowering 3	0.674
	CRR073315	Gold flowering 1	3.585
	CRR073316	Gold flowering 2	5.936
	CRR073317	Gold flowering 3	3.071
	CRR073318	Tawny withering 1	6.458
	CRR073319	Tawny withering 2	6.767
	CRR073320	Tawny withering 3	7.624