Detail information of GWHGAAZE012631


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004235346.12.11207E-76PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Solanum lycopersicum]
Swissprottr|Q9M9M9|NDUAC_ARATH1E-78Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
trEMBLtr|K4BJB2|K4BJB2_SOLLC8E-77Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g096940.2.1}
TAIR10AT3G03100.14E-62NADH:ubiquinone oxidoreductase, 17.2kDa subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8879664988798882-
GWHAAZE00000003mRNA8879664988798882-
GWHAAZE00000003exon8879883988798882-
GWHAAZE00000003exon8879854988798640-
GWHAAZE00000003exon8879801288798121-
GWHAAZE00000003exon8879664988797110-
GWHAAZE00000003CDS8879883988798882-
GWHAAZE00000003CDS8879854988798640-
GWHAAZE00000003CDS8879801288798121-
GWHAAZE00000003CDS8879695288797110-
GWHAAZE00000003three_prime_UTR8879664988796951-
Transcript Sequence

Network for GWHGAAZE012631

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0279


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05071.17NDUFA12251303.00E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11352NDUFA12 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0016020cellular_componentmembrane
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0009055molecular_functionelectron transfer activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf161.334
SRR3591706second leaf68.032
SRR3591707mature leaf43.026
SRR3591708Shoot apex99.568
SRR3591709Stem90.599
SRR3591710White floral bud68.644
SRR3591711White flower82.246
SRR3591712Green floral bud116.500
SRR3591713Yellow flower76.621
SRP173429 SRR8316895Juvenile bud stage 46.523
SRR8316896Juvenile bud stage 69.278
SRR8316897Juvenile bud stage 42.609
SRR8316894Third green stage 30.916
SRR8316900Third green stage 140.676
SRR8316901Third green stage 122.229
SRR8316898Complete white stage 40.421
SRR8316899Complete white stage 102.651
SRR8316903Complete white stage 51.286
SRR8316902Silver flowering stage48.938
SRR8316904Silver flowering stage54.099
SRR8316905Silver flowering stage28.042
SRR8316906Gold flowering stage 95.239
SRR8316907Gold flowering stage 98.135
SRR8316908Gold flowering stage 127.228
SRP132670SRR6706286Control92.561
SRR6706287Light intensity 50%90.391
SRR6706288Light intensity 20%99.435
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1121.893
CNS0095593Slightly white alabastrum(diploid) 2138.523
CNS0095594Slightly white alabastrum(diploid) 3119.219
CNS0095595Whole white alabastrum(diploid) 2142.090
CNS0095596Whole white alabastrum(diploid) 3163.325
CNS0095597Whole white alabastrum(diploid) 4135.972
CNS0095598Silvery flower (diploied) 156.494
CNS0095599Silvery flower (diploied) 260.952
CNS0095600Silvery flower (diploied) 376.205
CNS0095601Golden flower (diploid) 155.535
CNS0095602Golden flower (diploid) 260.071
CNS0095603Golden flower (diploid) 357.143
CNS0095604Slightly white alabastrum(tetraploid) 1174.567
CNS0095605Slightly white alabastrum(tetraploid) 2171.130
CNS0095606Slightly white alabastrum(tetraploid) 3147.645
CNS0095607Whole white alabastrum(tetraploid) 1178.842
CNS0095608Whole white alabastrum(tetraploid) 2187.279
CNS0095609Whole white alabastrum(tetraploid) 3165.920
CNS0095610Silvery flower (tetraploid) 1122.888
CNS0095611Silvery flower (tetraploid) 2115.377
CNS0095612Silvery flower (tetraploid) 3115.310
CNS0095613Golden flower (tetraploid) 1113.229
CNS0095614Golden flower (tetraploid) 2124.762
CNS0095615Golden flower (tetraploid) 349.802
CRA001975CRR073297Stem 162.133
CRR073298Stem 269.274
CRR073299Stem 368.189
CRR073300Leaf 1104.469
CRR073301Leaf 299.068
CRR073302Leaf 3117.193
CRR073303Juvenile bud 1124.815
CRR073304Juvenile bud 2122.902
CRR073305Juvenile bud 376.431
CRR073306Third green 162.688
CRR073307Third green 274.755
CRR073308Third green 360.145
CRR073309Second white 177.403
CRR073310Second white 271.343
CRR073311Second white 351.211
CRR073312Silver flowering 143.489
CRR073313Silver flowering 240.391
CRR073314Silver flowering 339.612
CRR073315Gold flowering 127.531
CRR073316Gold flowering 225.128
CRR073317Gold flowering 316.979
CRR073318Tawny withering 165.991
CRR073319Tawny withering 265.457
CRR073320Tawny withering 362.482