Gene detail

Detail information of GWHGAAZE012659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU19706.1	2.1206E-125	hypothetical protein MIMGU_mgv1a014306mg [Erythranthe guttata]
Swissprot	tr\|P49209\|RL91_ARATH	3E-120	60S ribosomal protein L9-1
trEMBL	tr\|A0A022PV87\|A0A022PV87_ERYGU	8E-126	Uncharacterized protein {ECO:0000313\|EMBL:EYU19706.1}
TAIR10	AT1G33140.1	6E-95	Ribosomal protein L6 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89234287	89238078	-
GWHAAZE00000003	mRNA	89234287	89238078	-
GWHAAZE00000003	exon	89237704	89238078	-
GWHAAZE00000003	exon	89235393	89235515	-
GWHAAZE00000003	exon	89234287	89234515	-
GWHAAZE00000003	CDS	89237704	89238078	-
GWHAAZE00000003	CDS	89235393	89235515	-
GWHAAZE00000003	CDS	89234429	89234515	-
GWHAAZE00000003	three_prime_UTR	89234287	89234428	-

Transcript Sequence
>GWHTAAZE012673 ATGAAGACCATACTCTCATCAGAAACCATGGATATCCCCGAGGGAGTGAAGATCAAAGTGAAAGCAAAGATGATCGAAGTAGAAGGACCTAGAGGTAAACTTACACGTAATTTCAAGCACCTGAATCTCGATTTTCAGCTCATTACTGACGAAGAGACCGGCGGCAAGAAGCTTAAGGTAGATGCGTGGTTCGGTTCTCGTAAGACCACCGCTGCGATCAGGACTGCTCTAAGTCATGTAGGGAATCTGATCAATGGAGTTACTAAAGGATACCGCTACAAAATGCGATTTGTTTACGCTCACTTTCCGATCAATGCTAGTATTGGAAATGATGGCAAGTCTATTGAGATCCGTAACTTCCTTGGCGAAAAGAAGGTGAGGAAAGTGCAAATGCTTGATGGGGTTTCAATTGTGCGGTCTGAGAAGGTTAAAGATGAGTTGGTGTTGGATGGGAATGATATTGAACTCGTATCGCGGTCTGCTGCCCTGATTAACCAAAAATGTCACGTTAAGAACAAAGATATCCGAAAGTTTCTTGACGGTATCTATGTGAGTGAGAAGGGAGCAATGGCCGAGGAAGAATGATTAGTTAGGCGATACTTGCATCTCTTTTAATTATATTAGTTCTCCTTTTATCCCCCCAAAGTTATTTTGGAATCCTTTTGTTAAAACTTGTTTGTGTTTGCATTCTACAGTTTTGTGTTATGGGATATTTTGCTGAAGATTT

Network for GWHGAAZE012659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00347.24	Ribosomal_L6	12	90	1.80E-11
PF00347.24	Ribosomal_L6	102	181	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02940	RP-L9e, RPL9	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0019843	molecular_function	rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	570.275
	SRR3591706	second leaf	165.382
	SRR3591707	mature leaf	117.245
	SRR3591708	Shoot apex	713.831
	SRR3591709	Stem	253.960
	SRR3591710	White floral bud	240.354
	SRR3591711	White flower	380.545
	SRR3591712	Green floral bud	566.185
	SRR3591713	Yellow flower	313.428
SRP173429	SRR8316895	Juvenile bud stage	312.068
	SRR8316896	Juvenile bud stage	473.012
	SRR8316897	Juvenile bud stage	285.831
	SRR8316894	Third green stage	207.850
	SRR8316900	Third green stage	870.457
	SRR8316901	Third green stage	694.273
	SRR8316898	Complete white stage	137.185
	SRR8316899	Complete white stage	572.456
	SRR8316903	Complete white stage	195.427
	SRR8316902	Silver flowering stage	123.251
	SRR8316904	Silver flowering stage	129.742
	SRR8316905	Silver flowering stage	72.796
	SRR8316906	Gold flowering stage	227.610
	SRR8316907	Gold flowering stage	227.087
	SRR8316908	Gold flowering stage	356.633
SRP132670	SRR6706286	Control	454.704
	SRR6706287	Light intensity 50%	490.124
	SRR6706288	Light intensity 20%	568.329
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	658.409
	CNS0095593	Slightly white alabastrum(diploid) 2	774.975
	CNS0095594	Slightly white alabastrum(diploid) 3	581.803
	CNS0095595	Whole white alabastrum(diploid) 2	607.053
	CNS0095596	Whole white alabastrum(diploid) 3	773.471
	CNS0095597	Whole white alabastrum(diploid) 4	477.104
	CNS0095598	Silvery flower (diploied) 1	331.089
	CNS0095599	Silvery flower (diploied) 2	347.528
	CNS0095600	Silvery flower (diploied) 3	294.844
	CNS0095601	Golden flower (diploid) 1	270.590
	CNS0095602	Golden flower (diploid) 2	241.343
	CNS0095603	Golden flower (diploid) 3	240.726
	CNS0095604	Slightly white alabastrum(tetraploid) 1	579.604
	CNS0095605	Slightly white alabastrum(tetraploid) 2	567.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	658.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	333.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	356.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	611.390
	CNS0095610	Silvery flower (tetraploid) 1	291.517
	CNS0095611	Silvery flower (tetraploid) 2	280.213
	CNS0095612	Silvery flower (tetraploid) 3	227.285
	CNS0095613	Golden flower (tetraploid) 1	212.629
	CNS0095614	Golden flower (tetraploid) 2	241.211
	CNS0095615	Golden flower (tetraploid) 3	121.146
CRA001975	CRR073297	Stem 1	501.209
	CRR073298	Stem 2	556.053
	CRR073299	Stem 3	512.877
	CRR073300	Leaf 1	525.325
	CRR073301	Leaf 2	565.057
	CRR073302	Leaf 3	741.245
	CRR073303	Juvenile bud 1	640.520
	CRR073304	Juvenile bud 2	541.656
	CRR073305	Juvenile bud 3	451.751
	CRR073306	Third green 1	115.970
	CRR073307	Third green 2	99.493
	CRR073308	Third green 3	112.774
	CRR073309	Second white 1	194.535
	CRR073310	Second white 2	125.326
	CRR073311	Second white 3	96.027
	CRR073312	Silver flowering 1	152.286
	CRR073313	Silver flowering 2	189.430
	CRR073314	Silver flowering 3	118.644
	CRR073315	Gold flowering 1	236.511
	CRR073316	Gold flowering 2	264.800
	CRR073317	Gold flowering 3	211.186
	CRR073318	Tawny withering 1	416.711
	CRR073319	Tawny withering 2	359.491
	CRR073320	Tawny withering 3	466.454