Detail information of GWHGAAZE012659


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU19706.12.1206E-125hypothetical protein MIMGU_mgv1a014306mg [Erythranthe guttata]
Swissprottr|P49209|RL91_ARATH3E-12060S ribosomal protein L9-1
trEMBLtr|A0A022PV87|A0A022PV87_ERYGU8E-126Uncharacterized protein {ECO:0000313|EMBL:EYU19706.1}
TAIR10AT1G33140.16E-95Ribosomal protein L6 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8923428789238078-
GWHAAZE00000003mRNA8923428789238078-
GWHAAZE00000003exon8923770489238078-
GWHAAZE00000003exon8923539389235515-
GWHAAZE00000003exon8923428789234515-
GWHAAZE00000003CDS8923770489238078-
GWHAAZE00000003CDS8923539389235515-
GWHAAZE00000003CDS8923442989234515-
GWHAAZE00000003three_prime_UTR8923428789234428-
Transcript Sequence

Network for GWHGAAZE012659

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00347.24Ribosomal_L612901.80E-11
PF00347.24Ribosomal_L61021811.30E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02940RP-L9e, RPL9 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0019843molecular_functionrRNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE012659.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301002003004005006007008009001000Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf570.275
SRR3591706second leaf165.382
SRR3591707mature leaf117.245
SRR3591708Shoot apex713.831
SRR3591709Stem253.960
SRR3591710White floral bud240.354
SRR3591711White flower380.545
SRR3591712Green floral bud566.185
SRR3591713Yellow flower313.428
SRP173429 SRR8316895Juvenile bud stage 312.068
SRR8316896Juvenile bud stage 473.012
SRR8316897Juvenile bud stage 285.831
SRR8316894Third green stage 207.850
SRR8316900Third green stage 870.457
SRR8316901Third green stage 694.273
SRR8316898Complete white stage 137.185
SRR8316899Complete white stage 572.456
SRR8316903Complete white stage 195.427
SRR8316902Silver flowering stage123.251
SRR8316904Silver flowering stage129.742
SRR8316905Silver flowering stage72.796
SRR8316906Gold flowering stage 227.610
SRR8316907Gold flowering stage 227.087
SRR8316908Gold flowering stage 356.633
SRP132670SRR6706286Control454.704
SRR6706287Light intensity 50%490.124
SRR6706288Light intensity 20%568.329
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1658.409
CNS0095593Slightly white alabastrum(diploid) 2774.975
CNS0095594Slightly white alabastrum(diploid) 3581.803
CNS0095595Whole white alabastrum(diploid) 2607.053
CNS0095596Whole white alabastrum(diploid) 3773.471
CNS0095597Whole white alabastrum(diploid) 4477.104
CNS0095598Silvery flower (diploied) 1331.089
CNS0095599Silvery flower (diploied) 2347.528
CNS0095600Silvery flower (diploied) 3294.844
CNS0095601Golden flower (diploid) 1270.590
CNS0095602Golden flower (diploid) 2241.343
CNS0095603Golden flower (diploid) 3240.726
CNS0095604Slightly white alabastrum(tetraploid) 1579.604
CNS0095605Slightly white alabastrum(tetraploid) 2567.140
CNS0095606Slightly white alabastrum(tetraploid) 3658.090
CNS0095607Whole white alabastrum(tetraploid) 1333.187
CNS0095608Whole white alabastrum(tetraploid) 2356.852
CNS0095609Whole white alabastrum(tetraploid) 3611.390
CNS0095610Silvery flower (tetraploid) 1291.517
CNS0095611Silvery flower (tetraploid) 2280.213
CNS0095612Silvery flower (tetraploid) 3227.285
CNS0095613Golden flower (tetraploid) 1212.629
CNS0095614Golden flower (tetraploid) 2241.211
CNS0095615Golden flower (tetraploid) 3121.146
CRA001975CRR073297Stem 1501.209
CRR073298Stem 2556.053
CRR073299Stem 3512.877
CRR073300Leaf 1525.325
CRR073301Leaf 2565.057
CRR073302Leaf 3741.245
CRR073303Juvenile bud 1640.520
CRR073304Juvenile bud 2541.656
CRR073305Juvenile bud 3451.751
CRR073306Third green 1115.970
CRR073307Third green 299.493
CRR073308Third green 3112.774
CRR073309Second white 1194.535
CRR073310Second white 2125.326
CRR073311Second white 396.027
CRR073312Silver flowering 1152.286
CRR073313Silver flowering 2189.430
CRR073314Silver flowering 3118.644
CRR073315Gold flowering 1236.511
CRR073316Gold flowering 2264.800
CRR073317Gold flowering 3211.186
CRR073318Tawny withering 1416.711
CRR073319Tawny withering 2359.491
CRR073320Tawny withering 3466.454