Gene detail

Detail information of GWHGAAZE012661

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075874.1	2.6255E-151	PREDICTED: NAC domain-containing protein 45 [Sesamum indicum]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	9E-50	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|A0A068U8Z4\|A0A068U8Z4_COFCA	4E-148	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP04976.1}
TAIR10	AT5G24590.2	3E-73	TCV-interacting protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89287448	89292879	+
GWHAAZE00000003	mRNA	89287448	89292879	+
GWHAAZE00000003	exon	89287448	89287628	+
GWHAAZE00000003	exon	89288113	89288396	+
GWHAAZE00000003	exon	89289455	89289778	+
GWHAAZE00000003	exon	89289896	89290240	+
GWHAAZE00000003	exon	89290890	89291303	+
GWHAAZE00000003	exon	89291683	89292102	+
GWHAAZE00000003	exon	89292539	89292743	+
GWHAAZE00000003	exon	89292839	89292879	+
GWHAAZE00000003	CDS	89287448	89287628	+
GWHAAZE00000003	CDS	89288113	89288396	+
GWHAAZE00000003	CDS	89289455	89289778	+
GWHAAZE00000003	CDS	89289896	89290240	+
GWHAAZE00000003	CDS	89290890	89291303	+
GWHAAZE00000003	CDS	89291683	89292102	+
GWHAAZE00000003	CDS	89292539	89292743	+
GWHAAZE00000003	CDS	89292839	89292879	+

Transcript Sequence
>GWHTAAZE012675 CTAGAAAATATGGCAGTTTTGCCTATACAATCGCAATATCTGCCGGTGGGTTACCGATTCCGGCCTACCGACGAAGAGCTCATCAACCACTACCTAAAGCTGAAGATCAACGGATTTGATAAAGAAGTTCGTGTTATTCGAGAGCTCGATGTTTGTAGACAAGAGCCTTGGGACTTACCTGATTTATCGGAGATTAAGTCGTCAGATGATGAGTGGTTCTTCTTCTGTCCGAAGGATCGGAAGTATCAAAATGGAGATAGATTGAACAGGGCTACAAAAGCAGGGTACTGGAAGGCAACTGGTAGGGATAGGTTGATCAAGGCTAAAAAGGGAACGAATGTTATTGGAAAGAAAAAGACTTTGGTTTTTCATAGTGGGCGTGCTCCTAAGGGTGAGAGGACTCGTTGGGTAATTCATGAGTACTGTGCTACTGATAAGGCACTTGATGGCACCCACCCTGGACAGAGTGCCTTTACACTATGTAAGCTTTTTAAGAAGCAGAATGATGGGAAGCAAGTTGAGAACACTGAAGGTTCGAACTGCAATGAAGTTGATGAGAATGTTTCTTCTCCTTCTGTAATCAAACCTTATGCTGAAGATACACCATCAGAGCCATTTACTCCTATATCTGCTGTCCAAGCTGAAAAACATCCTTCGGGTGCCGAAAGTTTCCTAGTAGAAAATTCTGAGAGAACAATTGTTGACTCTCCTTCGATTGTTGACTGGCCTGGCAATAACTCTATCAGTCTCACTGGCAATGCAGAAGATAAGGTGCTAACATCAATCCAGCCTGATCCAGAGTTGGAAAGAGCACTTAGAGATATCTGTGACCCTACGCCAGACCCACAGGATTCAAAAATCTTCTCCCCGGTGCACTCACATATGAAATTGGAGTTTGGGAATTCTTACTTACGTAGTGTAAACCCGGATATTTTTGGCGCCAACCATAATGAGTACGAGTATGGTACAGATGGAATATTTATTAACGAGTTCTTGGACTCTCTCCTAGTTAACTCAGAGGAGAATTCAGGTGTTGAAAGTGAGACCCCACAATATGCTAATACTTTGGAGGGGGCCTTTGGTAAGGATACTGGATCTTGTAGCGAGTGTGATGTGGAAATGGTCCAAGAAGAGCTTCATCCAGTATTTTTCCAAGATGGTTTGCACACAGAGAACATTGAGCAGAAGGATGTTTTACAGATGGAAGCATATATGCAAGCTAACTTTCATCCTCATATTAGTGACTATGGGGACTTGGATTTCGTGCCAAACAATCCTGACCCTTCGTCTATGGTTTCTAATGCTTATAATTTGTTCAATGGTCTTGAAGATTCTAGCAATGGAGTTGGGAGTGACAATAGTGATTTTGGAACTGGAATCAAAATAAGGACTCGCCAACCACAAAATCAAGAAACTGTCCAAAACTTTGCTTCACAAGGAAATGCAACAAGAAGAATCCGTTTACAAAAGAAACTTCAAACTGGACCAGTTTCTTATCGCTATCAGACAGAATCGAGCAAAACTGAAGAAAAACCAACAGTGGTCAAGCTTGAGGTGATGGAGAATAGAGAGAGGAAAGATCTGTTACAGATGGAAACTGATTTACAAGGTCACATAAATCTACATGTTAGGGACGACGAGGGAAGTAGAAATTTGGGTTTTGTGCCAAACACACCTGATGCTTCATCAACTGTTTCTACTGCCCATAATTTGTTAGATGGTCTTGAAGAACCACGCAGCGATAGCAATGTAGTTGAGAGTGCCAATAGTAAGTTTGGAACTGGAATCAAGATAAGGACTCGCCAACCAAGAAACCAAGAAAGTGCAGGAAATGTTGCTTCACAAGGAAATGCATCACGAAGAATCCGTCTACAAAAGAAACTTCAAATTGGACCGGTTTTGTGTAGCCATGAGACGGGGCTGGGCAATAGTAAAGCACGTTATGAAGAAAAAACAGTAATAGATGAGGCTGAAATAGCTCAAGAGAAGCATGCTCCTGCTGCTATAACATGTGAGACCCATGATGTATCAGTTGCCAGATCCAATGGCAATGGAGAACTTACTCGAGAATTGAGTTCCTGCGTGAAGTTGAAAGATGGTTTTTCTCTGCAAGGCCATGTAAAAGCTCGTCCGGTAGATTTTTCAGTAATGCCTCGAGTACTTTTGGTTTTAGCCCCAGATGATGTTTTGGCTAGAGATTTAGGGCAATGCTGA

Network for GWHGAAZE012661

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	15	142	1.50E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	254.925
	SRR3591706	second leaf	50.212
	SRR3591707	mature leaf	46.479
	SRR3591708	Shoot apex	107.409
	SRR3591709	Stem	175.989
	SRR3591710	White floral bud	64.726
	SRR3591711	White flower	68.219
	SRR3591712	Green floral bud	70.084
	SRR3591713	Yellow flower	38.631
SRP173429	SRR8316895	Juvenile bud stage	161.653
	SRR8316896	Juvenile bud stage	169.331
	SRR8316897	Juvenile bud stage	175.536
	SRR8316894	Third green stage	27.560
	SRR8316900	Third green stage	57.716
	SRR8316901	Third green stage	86.597
	SRR8316898	Complete white stage	15.080
	SRR8316899	Complete white stage	148.147
	SRR8316903	Complete white stage	28.756
	SRR8316902	Silver flowering stage	18.503
	SRR8316904	Silver flowering stage	22.024
	SRR8316905	Silver flowering stage	10.380
	SRR8316906	Gold flowering stage	38.002
	SRR8316907	Gold flowering stage	28.497
	SRR8316908	Gold flowering stage	37.402
SRP132670	SRR6706286	Control	19.963
	SRR6706287	Light intensity 50%	28.133
	SRR6706288	Light intensity 20%	26.974
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	111.119
	CNS0095593	Slightly white alabastrum(diploid) 2	134.473
	CNS0095594	Slightly white alabastrum(diploid) 3	123.338
	CNS0095595	Whole white alabastrum(diploid) 2	102.893
	CNS0095596	Whole white alabastrum(diploid) 3	26.656
	CNS0095597	Whole white alabastrum(diploid) 4	74.517
	CNS0095598	Silvery flower (diploied) 1	143.807
	CNS0095599	Silvery flower (diploied) 2	142.772
	CNS0095600	Silvery flower (diploied) 3	86.434
	CNS0095601	Golden flower (diploid) 1	175.730
	CNS0095602	Golden flower (diploid) 2	152.450
	CNS0095603	Golden flower (diploid) 3	150.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.905
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.921
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.908
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.706
	CNS0095610	Silvery flower (tetraploid) 1	29.741
	CNS0095611	Silvery flower (tetraploid) 2	26.501
	CNS0095612	Silvery flower (tetraploid) 3	29.562
	CNS0095613	Golden flower (tetraploid) 1	14.084
	CNS0095614	Golden flower (tetraploid) 2	22.760
	CNS0095615	Golden flower (tetraploid) 3	23.625
CRA001975	CRR073297	Stem 1	80.235
	CRR073298	Stem 2	68.473
	CRR073299	Stem 3	60.391
	CRR073300	Leaf 1	73.092
	CRR073301	Leaf 2	74.916
	CRR073302	Leaf 3	46.236
	CRR073303	Juvenile bud 1	42.783
	CRR073304	Juvenile bud 2	29.515
	CRR073305	Juvenile bud 3	57.205
	CRR073306	Third green 1	18.297
	CRR073307	Third green 2	18.201
	CRR073308	Third green 3	18.419
	CRR073309	Second white 1	17.440
	CRR073310	Second white 2	19.760
	CRR073311	Second white 3	16.633
	CRR073312	Silver flowering 1	26.486
	CRR073313	Silver flowering 2	29.050
	CRR073314	Silver flowering 3	25.096
	CRR073315	Gold flowering 1	34.916
	CRR073316	Gold flowering 2	56.906
	CRR073317	Gold flowering 3	28.069
	CRR073318	Tawny withering 1	67.428
	CRR073319	Tawny withering 2	85.010
	CRR073320	Tawny withering 3	96.929