Gene detail

Detail information of GWHGAAZE012674

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002273195.2	PREDICTED: subtilisin-like protease SBT3.5 [Vitis vinifera]
Swissprot	tr\|Q9MAP5\|SBT33_ARATH	Subtilisin-like protease SBT3.3 {ECO:0000303\|PubMed:16193095} (Precursor)
trEMBL	tr\|F6H755\|F6H755_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48078.1}
TAIR10	AT4G10550.3	Subtilase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89563843	89568977	-
GWHAAZE00000003	mRNA	89563843	89568977	-
GWHAAZE00000003	exon	89568901	89568977	-
GWHAAZE00000003	exon	89568553	89568650	-
GWHAAZE00000003	exon	89568011	89568166	-
GWHAAZE00000003	exon	89566833	89567506	-
GWHAAZE00000003	exon	89566446	89566525	-
GWHAAZE00000003	exon	89566038	89566283	-
GWHAAZE00000003	exon	89565846	89565960	-
GWHAAZE00000003	exon	89565242	89565431	-
GWHAAZE00000003	exon	89563843	89564408	-
GWHAAZE00000003	CDS	89568901	89568977	-
GWHAAZE00000003	CDS	89568553	89568650	-
GWHAAZE00000003	CDS	89568011	89568166	-
GWHAAZE00000003	CDS	89566833	89567506	-
GWHAAZE00000003	CDS	89566446	89566525	-
GWHAAZE00000003	CDS	89566038	89566283	-
GWHAAZE00000003	CDS	89565846	89565960	-
GWHAAZE00000003	CDS	89565242	89565431	-
GWHAAZE00000003	CDS	89563843	89564408	-

Transcript Sequence
>GWHTAAZE012688 ATGGGGAGAAGACAGCATGAGGATACAGAACTCATAACAAAAACCCATCATGAAATGCTCGGCGCCGTACTTGAAAGCAAAGAAGCAACCGCAGATTCTATGGTCTATAGCTACAAACACGGCTTCTCGGGTTTTGCAGCCAAGTTGACAGAGTCTCAAGCACAGATGCTTTCAGAGTTACCTGACGTGGTTCAAGTTATTCCCAATCGCCTTTACAAACTGCGGACAACCCGGAGCTGGGATTACCTCGGTCTCTCTTCACATTCTCCCACGAATCTTCTGCATGAAACCAAGATGGGTGATGGTGCCATCATTGGCCTCCTCGATACAGGTATATGGCCAGAATCTGAAGCTTTCAGCGATCAAGACTTGGGGGAGATCCCCTCTCGGTGGAAGGGATTTTGCGAATCAGGCGAGTCCTTCAATGCAACAAAGAACTGTAACAAGAAGCTAATAGGAGCTCGGTATTTTATCAAGGGTCTTGAAGCAGAACAAGGCCGACCATACAACACAACCAAATATAATGAGTACTATTCCCCAAGAGATTCGCTTGGACATGGAACACACACATCTGCAACTGCCGGTGGCTCTTTTGTAGCCAATGTGAGCTACAACGGACTGGCTAATGGGACCGTTAGGGGCGGTGCACCCCGGGCTCGGTTGGCTATGTACAAAGTGTGCTGGAATTTGGATGGTGGAGTTTGTGCTTATGCTGATCTAATGAAAGCCTTTGATGAAGCTATATATGATGGCGTGGATGTTTTATCACTGTCAATTGGCCAAGATATTCCCTTGTTCACGGATGTTGATGTGCGTGATGGGGTCCAATATGGTGCATTTCATGCTGTGGAAAGAGGGATAAGTGTTGTTTGTGCAGCAGGGAATTCTGGACCGATTTCCCAAACGGTTGGGAATACGGCACCGTGGATTTTGACTGTTGCAGCTAGCACGGTTGATCGATCATTCCCTACACCCATTACGCTTGGAAACAACAAAACCTTAGTGGGCCAAGCCATGTTTACGGGAAAGGATACAGGCTTCACAAGCCTAATGTATCCAGAGGTACCGGAGATCCTAGAACCTCGTTATTGTCAAGATCTATCACCAATTGATACTTCGATGGCTGGAAATGTAGTGCTCTGCTTCACTTTAGATGTCACTGGACTGGCAATTAACATTGCTGAATTGGCTGTCCAATATGCTGGCGGGGTTGGGATAATTGTTGCTAGAAATCCAAGTACCACCCTTTACTCGTGCAGAAATAATTTCCCATGTGTTGAAGTAAGCTACGAAATTGGCACCCAGATACTCCGCTATATTCGTTCTACCAGGCACCCGCAGGTTAGGCTTAGACCTTCCAAATCATATGTAGGCAAACCTGTATCAACCAATGTGGCGTACTTCTCATCACGAGGTCCTAGCTCCATTAACCCGGCAGTACTAAAGCCAGATATAGCAGCCCCCGGAGTCAAAATCTTAGCAGCAGTCCCTCCTGGTCCAAACAAGAAGGGCGCATTCAGTTTTTATTCTGGAACATCCATGGCGACACCTCACGTATCGGGTATTGTAGCGCTGCTCAAATCCTTGCACTCTGATTGGTCTCCTGCTGCTATCAAGTCAGCAATCATCACAACAGCATGGACAACCGATCCTATGGGAGAACCCATTTTTGCAGAGGGAGACCCAATAAAACTTGCAGACCCGTTCGATTTTGGAGGCGGGGTGGTGAACCCGAATAAAGCACGGAATCCGGGTCTTGTATATGACATGGGGAAAGAAGATTATGTTCATTATCTATGTGCCACGGGGTATAATAATACTTCCATCAGTAAGCTTATTAAACATACCACATATTGCCCCAGCGGACCACCCTCAATTCTCGATGTAAATCTTCCCTCCATAACTGTACCAAGCCTAAAAAACACAGTTACTCTCACCAGAACTGTCACAAATGTTGGACCTGTATACTCCAAATATAAAACTATAATCAAGTCTCCACCAGGCATTGTAATAGCAGTAAAGCCTCGTAATTTGATCTTCAACTCAACCGTGACAAAGGTCTCCTTCACTATCACGATTTCCACGAGCCACCAGGTCAACACGGGATACTCTTTTGGGAGCTTGACCTGGACTGATGGGGTCCATTTAGTAAGAAGTCCCGTATGTGTTAGAACCGAAATTGCAGATTATTATGCAGATTAG

Network for GWHGAAZE012674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0174

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05922.17	Inhibitor_I9	8	74	7.80E-14
PF00082.23	Peptidase_S8	100	546	3.00E-46
PF17766.2	fn3_6	628	723	2.70E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.908
	SRR3591706	second leaf	92.422
	SRR3591707	mature leaf	143.037
	SRR3591708	Shoot apex	35.408
	SRR3591709	Stem	66.804
	SRR3591710	White floral bud	35.316
	SRR3591711	White flower	40.828
	SRR3591712	Green floral bud	5.228
	SRR3591713	Yellow flower	2.587
SRP173429	SRR8316895	Juvenile bud stage	21.573
	SRR8316896	Juvenile bud stage	16.674
	SRR8316897	Juvenile bud stage	8.665
	SRR8316894	Third green stage	8.881
	SRR8316900	Third green stage	11.920
	SRR8316901	Third green stage	10.755
	SRR8316898	Complete white stage	4.581
	SRR8316899	Complete white stage	28.782
	SRR8316903	Complete white stage	17.647
	SRR8316902	Silver flowering stage	2.061
	SRR8316904	Silver flowering stage	3.483
	SRR8316905	Silver flowering stage	1.405
	SRR8316906	Gold flowering stage	3.653
	SRR8316907	Gold flowering stage	4.561
	SRR8316908	Gold flowering stage	3.412
SRP132670	SRR6706286	Control	22.260
	SRR6706287	Light intensity 50%	20.399
	SRR6706288	Light intensity 20%	17.758
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.096
	CNS0095593	Slightly white alabastrum(diploid) 2	18.914
	CNS0095594	Slightly white alabastrum(diploid) 3	18.817
	CNS0095595	Whole white alabastrum(diploid) 2	15.488
	CNS0095596	Whole white alabastrum(diploid) 3	4.634
	CNS0095597	Whole white alabastrum(diploid) 4	12.083
	CNS0095598	Silvery flower (diploied) 1	80.076
	CNS0095599	Silvery flower (diploied) 2	51.423
	CNS0095600	Silvery flower (diploied) 3	24.241
	CNS0095601	Golden flower (diploid) 1	57.239
	CNS0095602	Golden flower (diploid) 2	60.318
	CNS0095603	Golden flower (diploid) 3	55.735
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.112
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.295
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.343
	CNS0095610	Silvery flower (tetraploid) 1	3.662
	CNS0095611	Silvery flower (tetraploid) 2	13.865
	CNS0095612	Silvery flower (tetraploid) 3	5.595
	CNS0095613	Golden flower (tetraploid) 1	2.527
	CNS0095614	Golden flower (tetraploid) 2	4.545
	CNS0095615	Golden flower (tetraploid) 3	0.767
CRA001975	CRR073297	Stem 1	37.846
	CRR073298	Stem 2	31.364
	CRR073299	Stem 3	22.569
	CRR073300	Leaf 1	15.107
	CRR073301	Leaf 2	18.031
	CRR073302	Leaf 3	13.345
	CRR073303	Juvenile bud 1	7.787
	CRR073304	Juvenile bud 2	3.829
	CRR073305	Juvenile bud 3	15.144
	CRR073306	Third green 1	0.743
	CRR073307	Third green 2	0.608
	CRR073308	Third green 3	2.084
	CRR073309	Second white 1	0.573
	CRR073310	Second white 2	0.427
	CRR073311	Second white 3	0.563
	CRR073312	Silver flowering 1	0.486
	CRR073313	Silver flowering 2	2.992
	CRR073314	Silver flowering 3	1.739
	CRR073315	Gold flowering 1	63.133
	CRR073316	Gold flowering 2	121.127
	CRR073317	Gold flowering 3	66.237
	CRR073318	Tawny withering 1	33.774
	CRR073319	Tawny withering 2	54.602
	CRR073320	Tawny withering 3	27.079