Detail information of GWHGAAZE012677


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010253494.10PREDICTED: uncharacterized protein LOC104594717 isoform X1 [Nelumbo nucifera]
trEMBLtr|W1NVR0|W1NVR0_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERM99682.1}
TAIR10AT3G49400.12E-112Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8965002289671715+
GWHAAZE00000003mRNA8965002289671715+
GWHAAZE00000003exon8965002289650138+
GWHAAZE00000003exon8965193189652015+
GWHAAZE00000003exon8965284589652947+
GWHAAZE00000003exon8965305189653135+
GWHAAZE00000003exon8965360389653689+
GWHAAZE00000003exon8965382089653926+
GWHAAZE00000003exon8965419089654325+
GWHAAZE00000003exon8965441689654518+
GWHAAZE00000003exon8965497189655190+
GWHAAZE00000003exon8965591889655976+
GWHAAZE00000003exon8965673689656860+
GWHAAZE00000003exon8965744489657904+
GWHAAZE00000003exon8965977389659854+
GWHAAZE00000003exon8966665089666826+
GWHAAZE00000003exon8966690889666983+
GWHAAZE00000003exon8966711389667177+
GWHAAZE00000003exon8966726289667354+
GWHAAZE00000003exon8966744389667496+
GWHAAZE00000003exon8966852689668572+
GWHAAZE00000003exon8966968589670359+
GWHAAZE00000003exon8967097289671134+
GWHAAZE00000003exon8967159689671715+
GWHAAZE00000003CDS8965002289650138+
GWHAAZE00000003CDS8965193189652015+
GWHAAZE00000003CDS8965284589652947+
GWHAAZE00000003CDS8965305189653135+
GWHAAZE00000003CDS8965360389653689+
GWHAAZE00000003CDS8965382089653926+
GWHAAZE00000003CDS8965419089654325+
GWHAAZE00000003CDS8965441689654518+
GWHAAZE00000003CDS8965497189655190+
GWHAAZE00000003CDS8965591889655976+
GWHAAZE00000003CDS8965673689656860+
GWHAAZE00000003CDS8965744489657904+
GWHAAZE00000003CDS8965977389659854+
GWHAAZE00000003CDS8966665089666826+
GWHAAZE00000003CDS8966690889666983+
GWHAAZE00000003CDS8966711389667177+
GWHAAZE00000003CDS8966726289667354+
GWHAAZE00000003CDS8966744389667496+
GWHAAZE00000003CDS8966852689668572+
GWHAAZE00000003CDS8966968589670359+
GWHAAZE00000003CDS8967097289671134+
GWHAAZE00000003CDS8967159689671715+
Transcript Sequence

Network for GWHGAAZE012677

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12657.8TFIIIC_delta141551.80E-16
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.252
SRR3591706second leaf4.132
SRR3591707mature leaf5.798
SRR3591708Shoot apex8.742
SRR3591709Stem5.941
SRR3591710White floral bud3.650
SRR3591711White flower5.215
SRR3591712Green floral bud4.582
SRR3591713Yellow flower3.346
SRP173429 SRR8316895Juvenile bud stage 6.793
SRR8316896Juvenile bud stage 9.308
SRR8316897Juvenile bud stage 2.827
SRR8316894Third green stage 3.327
SRR8316900Third green stage 5.381
SRR8316901Third green stage 5.472
SRR8316898Complete white stage 1.327
SRR8316899Complete white stage 6.100
SRR8316903Complete white stage 2.872
SRR8316902Silver flowering stage1.962
SRR8316904Silver flowering stage2.520
SRR8316905Silver flowering stage1.056
SRR8316906Gold flowering stage 4.475
SRR8316907Gold flowering stage 3.799
SRR8316908Gold flowering stage 3.770
SRP132670SRR6706286Control4.688
SRR6706287Light intensity 50%4.796
SRR6706288Light intensity 20%4.356
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.183
CNS0095593Slightly white alabastrum(diploid) 23.161
CNS0095594Slightly white alabastrum(diploid) 33.582
CNS0095595Whole white alabastrum(diploid) 23.196
CNS0095596Whole white alabastrum(diploid) 32.772
CNS0095597Whole white alabastrum(diploid) 42.819
CNS0095598Silvery flower (diploied) 17.581
CNS0095599Silvery flower (diploied) 23.650
CNS0095600Silvery flower (diploied) 34.555
CNS0095601Golden flower (diploid) 14.411
CNS0095602Golden flower (diploid) 25.271
CNS0095603Golden flower (diploid) 34.125
CNS0095604Slightly white alabastrum(tetraploid) 14.632
CNS0095605Slightly white alabastrum(tetraploid) 23.710
CNS0095606Slightly white alabastrum(tetraploid) 38.342
CNS0095607Whole white alabastrum(tetraploid) 13.214
CNS0095608Whole white alabastrum(tetraploid) 22.830
CNS0095609Whole white alabastrum(tetraploid) 35.328
CNS0095610Silvery flower (tetraploid) 14.780
CNS0095611Silvery flower (tetraploid) 25.006
CNS0095612Silvery flower (tetraploid) 33.939
CNS0095613Golden flower (tetraploid) 12.329
CNS0095614Golden flower (tetraploid) 24.419
CNS0095615Golden flower (tetraploid) 32.546
CRA001975CRR073297Stem 18.902
CRR073298Stem 28.988
CRR073299Stem 33.884
CRR073300Leaf 15.443
CRR073301Leaf 24.407
CRR073302Leaf 33.309
CRR073303Juvenile bud 12.272
CRR073304Juvenile bud 21.299
CRR073305Juvenile bud 33.291
CRR073306Third green 10.597
CRR073307Third green 20.163
CRR073308Third green 31.100
CRR073309Second white 10.731
CRR073310Second white 21.190
CRR073311Second white 31.322
CRR073312Silver flowering 11.049
CRR073313Silver flowering 21.488
CRR073314Silver flowering 31.493
CRR073315Gold flowering 11.759
CRR073316Gold flowering 25.554
CRR073317Gold flowering 32.115
CRR073318Tawny withering 13.145
CRR073319Tawny withering 23.556
CRR073320Tawny withering 32.718