Gene detail

Detail information of GWHGAAZE012686

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002276600.1	PREDICTED: importin subunit beta-1 [Vitis vinifera]
Swissprot	tr\|Q9FJD4\|IMB1_ARATH	Importin subunit beta-1 {ECO:0000305}
trEMBL	tr\|E0CV68\|E0CV68_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23029.3}
TAIR10	AT5G53480.1	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89847954	89850656	+
GWHAAZE00000003	mRNA	89847954	89850656	+
GWHAAZE00000003	exon	89847954	89850367	+
GWHAAZE00000003	exon	89850458	89850656	+
GWHAAZE00000003	CDS	89847954	89850367	+
GWHAAZE00000003	CDS	89850458	89850656	+

Transcript Sequence
>GWHTAAZE012700 ATGGCGATGGAGATCACCCAGATTCTTTTGAATGCACAATCGGTGGATGGAACGGTTCGGAAGCATGCTGAAGAAAGTTTGAAACAGTTTCAGGAACAAAACCTTGCTGGGTTTCTTTTGTCCCTCTCTGGAGAGCTTGCTAGTGAGGAGAGACCTGTTGATAGTCGTAAGTTAGCTGGTTTGATTCTTAAAAATGCCTTGGATGCCAAGGAACAACATAGAAAATTCGAGCTTGTTCAAAGATGGTTCTCCCTAGATGTTTCGGTGAAGACGCAAATAAAGGCAGGCTTGTTACAGACCCTTTCTTCTCCTGTTCCCGAGGCTCGTTCGACTGCATCACAAGTCATAGCAAAGGTTGCAGGCATTGAGCTGCCCCAGAAACAATGGCCAGAACTCATAGGATCACTCTTGTCAAACATTCACCAAGTCGCAGTTCATGTGAAGCAAGCTACTTTAGAAACTTTGGGCTACTTGTGTGAAGAAGTTTCACCAGATGTTGTCGATCAAGATCATGTAAATAAAATACTTACAGCAGTTGTTCAGGGTATGAGTGCATCGGAAGGGAGTGATGTTAGGCTCGCTGCTACCAGGGCATTGTATAATGCTCTTGGCTTTGCTCAGGCAAATTTTACCAACAACATGGAGCGGGATTATATCATGAGAGTTGTTTGTGAGGCGACTTTATCTCCAGAGGTTAAGATTCGGCAAGCCGCTTTTGAGTGTTTGGTGTCCATTTCTTCAACTTACTATGAAAAACTAGCTCCGTATATCCAAGACATTTTTAACATTACGGCCAAGGCTGTTAGGGAAGATGAGGAACCTGTAGCTCTTCAAGCAATCGAATTTTGGAGCTCAATTTGTGATGAAGAGATAGATATTCTAGAAGAGTATGGGGGTGATTTTACTGGCGACTCAGAATTTCCTTGTTTTTATTTCATCAAGCAAGCGCTTCCCGCACTTGTACCTATGTTGTTAGAGACGCTCCTTAAGCAAGAGGAAGATCAGGATCAGGATGAAGGCGCTTGGAATCTTGCTATGGCTGGTGGTACCTGCCTTGGTTTGGTAGCACGGACAGTGGGAGATGATGTGGTCCCACTTGTCATCCCGTTCATAGAAGAGAACATAGCGAAACCCGATTGGAGGCAAAGAGAGGCTGCAACTTATGCATTTGGCTCCATCTTGGAGGGCCCTTCGCCTGATAAATTAACTCCCATCGTTAATGTTGCTCTAAACTTCATGCTCTCAGCCTTAACAAGAGACCCAAATAGCCATGTGAAGGACACAACGGCTTGGACCCTTGGTAGAATATTTGAGTTCCTTCACGGTTCAACCATGGAGACACCCATTATTACCCAGGCCAACTGCCAGCAGATTATAACGGTGCTTCTCCAGAGCATGAAAGATGCTTCAAATGTTGCTGAGAAAGCATGCGGTGCTCTCTATTTTCTTGCCCAAGGTTATGAAGAAGTCGGTCCATCATCTCCCCTTACTCCTTATTTCCAAGAAATCGTTCAGTCCCTTCTTGCTGTTACTCACAGAGAAGATGCTGGGGAGTCTCGATTAAGGACTGGTGCATACGAGGCATTAAATGAAATGGTGAGGTGTTCTACTGACGAAACAGCTCCTATGGTGTTGCAGTTAGTTCCTGTAATAATGATGGAGCTTCACCAGACTCTTGAGGCTCAAAAACTTTCGTCCGATGAAAGAGAGAAGCAGAACGAGTTGCAAGGTCTTCTGTGTGGGTGCTTACAGGTCATTATTCAAAAACTAGGGGTATCGGAGCCAACTAAGTATGTCTTCATGCAGTATGCAGATCAGATAATGAATCTATTTCTTAGGGTTTTCGCTTGTAGGAGCGCCACTGTTCACGAGGAAGCAATGCTCGCCATTGGAGCCCTAGCCTACGCAACGGGGCCAGACTTTGCGAAATACATGCCCGAGTTCTATAAGTACTTGGAAATGGGTCTTCAAAATTTCGAGGAGTACCAAGTATGTGCTGTAACAGTTGGTGTTGTTGGGGATCTGTGCAGGGCATTGGAGGAAAAGGTACTACCCTACTGTGATGGGATTATGACCCAGCTTCTTAAGGACTTATCAAGCAACCAATTGCACCGATCTGTGAAGCCTCCTATTTTTTCGTGCTTTGGGGACATAGCATTGGCAATAGGAGAGAATTTTGAGAAATATTTGATGTATGCGATGCCTATGCTCCAAAGTGCAGCAGAGTTATCTTCCCACACATCGGGGGCTGATGACGAAATGATTGAGTACACTAATCTCTTGAGAAATGGGATATTGGAGGCATATTCTGGAATATTCCAAGGGTTTAAGAACTCTCCTAAAACCCAGTTATTGATTCCTTATGCACCGCACATTCTCCAATTCCTCGATAGCATTTACATGGAGAAAGACATGGATGATGTAGTGATGAAAACGGCAATTGGGGTGCTGGGAGATTTAGCAGATACACTGGGAAGTAATGCAGGTTCATTGATACAGCAATCAGTGTCGAGCAGAGACTTTTTGAATGAATGTTTGTCATCGGATGACCATATGATTAAGGAGTCTGCTGAGTGGGCCAAGTTGGCCATCAGTCGAGCCATTGCTGTTTGA

Network for GWHGAAZE012686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.20	IBN_N	23	102	1.20E-12
PF13513.7	HEAT_EZ	380	436	5.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14293	KPNB1, IPO1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0008536	molecular_function	Ran GTPase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.591
	SRR3591706	second leaf	18.330
	SRR3591707	mature leaf	16.362
	SRR3591708	Shoot apex	16.752
	SRR3591709	Stem	26.884
	SRR3591710	White floral bud	30.084
	SRR3591711	White flower	33.647
	SRR3591712	Green floral bud	27.552
	SRR3591713	Yellow flower	32.536
SRP173429	SRR8316895	Juvenile bud stage	15.099
	SRR8316896	Juvenile bud stage	22.367
	SRR8316897	Juvenile bud stage	8.858
	SRR8316894	Third green stage	10.905
	SRR8316900	Third green stage	31.677
	SRR8316901	Third green stage	26.892
	SRR8316898	Complete white stage	12.417
	SRR8316899	Complete white stage	37.637
	SRR8316903	Complete white stage	26.273
	SRR8316902	Silver flowering stage	12.265
	SRR8316904	Silver flowering stage	20.134
	SRR8316905	Silver flowering stage	10.440
	SRR8316906	Gold flowering stage	38.046
	SRR8316907	Gold flowering stage	30.965
	SRR8316908	Gold flowering stage	31.973
SRP132670	SRR6706286	Control	28.735
	SRR6706287	Light intensity 50%	31.475
	SRR6706288	Light intensity 20%	35.304
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.670
	CNS0095593	Slightly white alabastrum(diploid) 2	7.865
	CNS0095594	Slightly white alabastrum(diploid) 3	8.661
	CNS0095595	Whole white alabastrum(diploid) 2	6.842
	CNS0095596	Whole white alabastrum(diploid) 3	8.218
	CNS0095597	Whole white alabastrum(diploid) 4	7.718
	CNS0095598	Silvery flower (diploied) 1	11.497
	CNS0095599	Silvery flower (diploied) 2	9.857
	CNS0095600	Silvery flower (diploied) 3	38.869
	CNS0095601	Golden flower (diploid) 1	8.969
	CNS0095602	Golden flower (diploid) 2	38.904
	CNS0095603	Golden flower (diploid) 3	36.664
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.803
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.077
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.936
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.191
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.476
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.552
	CNS0095610	Silvery flower (tetraploid) 1	37.884
	CNS0095611	Silvery flower (tetraploid) 2	39.506
	CNS0095612	Silvery flower (tetraploid) 3	32.276
	CNS0095613	Golden flower (tetraploid) 1	14.284
	CNS0095614	Golden flower (tetraploid) 2	32.553
	CNS0095615	Golden flower (tetraploid) 3	40.634
CRA001975	CRR073297	Stem 1	34.364
	CRR073298	Stem 2	31.408
	CRR073299	Stem 3	30.204
	CRR073300	Leaf 1	40.453
	CRR073301	Leaf 2	32.638
	CRR073302	Leaf 3	30.371
	CRR073303	Juvenile bud 1	33.385
	CRR073304	Juvenile bud 2	32.540
	CRR073305	Juvenile bud 3	56.397
	CRR073306	Third green 1	26.871
	CRR073307	Third green 2	19.905
	CRR073308	Third green 3	26.394
	CRR073309	Second white 1	26.798
	CRR073310	Second white 2	24.981
	CRR073311	Second white 3	35.262
	CRR073312	Silver flowering 1	28.550
	CRR073313	Silver flowering 2	30.227
	CRR073314	Silver flowering 3	22.125
	CRR073315	Gold flowering 1	9.614
	CRR073316	Gold flowering 2	18.490
	CRR073317	Gold flowering 3	17.574
	CRR073318	Tawny withering 1	21.991
	CRR073319	Tawny withering 2	15.823
	CRR073320	Tawny withering 3	24.286