Gene detail

Detail information of GWHGAAZE012687

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009589243.1	4.9643E-153	PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|A2Z3C4\|6PGL4_ORYSI	2E-133	Probable 6-phosphogluconolactonase 4, chloroplastic (Precursor)
trEMBL	tr\|M1BL46\|M1BL46_SOLTU	5E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047627}
TAIR10	AT5G24400.1	8E-103	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89860816	89864273	-
GWHAAZE00000003	mRNA	89860816	89864273	-
GWHAAZE00000003	exon	89860816	89861280	-
GWHAAZE00000003	exon	89863051	89863186	-
GWHAAZE00000003	exon	89863909	89864273	-
GWHAAZE00000003	CDS	89863909	89864273	-
GWHAAZE00000003	CDS	89863051	89863186	-
GWHAAZE00000003	CDS	89860816	89861280	-

Transcript Sequence
>GWHTAAZE012701 ATGGCCTCTGCTCTCTCCGCTACCCTCCCCAAGCTACCCCCGTCCCTACACCTCCGGCAGCCGTACGTGTCCTCGCCGGCCCTCCTCCCTCACTCTCCCTTCTTTTGCTCGGTCAGGCCGATAACTTTATCATCATCTTTGATCATTGGCGAGAGATTGCAGTGTAGATCAAAAGCATCATCATCATCAGCGGCTGAGATGGCGAGTGAGAAAAGCCAAGGGAAGAACGTGAAGGTGTTTGATTCCGAGGAAGATCTGGCGGTTGCGCTGGCCAAATACACAGCCGATCTATCGGACAAGTTTACTAAAGAGAGAGGCTCCTTCACTGTTGTTGTCTCCGGTGGTTCACTCATCAAGTCCCTCAGGAAATTAGCTGAAGCTCCGTATATCAACTCAGTGGACTGGTCGAGATGGCACATGTTCTGGGTGGACGAAAGAGTAGTTCCCAAGGATCACCCAGATAGCAACTATCTGTTAGCATACGATGGTTTCCTATCCAAGGTTCCAATTCCCCCGGGTAATGTTTACGCCATCAATGATGCCTTGTCAGCAGAAGGTGCGGCTGAGGACTACGAGACCTGTCTTAAACAATTGGTTAAAAACAAGATCATAGATCTATCTTCGGCCAATGGGTTTCCAAAATTTGATCTCATGTTGTTGGGTATGGGCCCGGACGGACACGTGGCGTCTCTATTCCCGGGGCATCCTCTTGTCCAAGAAAACAAGCACTGGGTTACTTTCATTAAGGACTCCCCAAAACCACCACCCGAAAGGATCACTTTCACGTTTCCCGTAATTAACTCGTCTTCCCATATTGCCCTTGTGGCTACCGGCTCTGGTAAAGCACACCCAGTTCATGCAGCCCTGGGTGATGACCAAAGTTCCGATCAACTGCCTGTTCAAATGGTTTCACCCGAGGGTGAGCTAATATGGTTTCTTGATACGGCAGCAGCTGCCAAGCTGTAG

Network for GWHGAAZE012687

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01182.21	Glucosamine_iso	82	311	8.90E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01057	PGLS, pgl, devB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0017057	molecular_function	6-phosphogluconolactonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.625
	SRR3591706	second leaf	42.248
	SRR3591707	mature leaf	35.755
	SRR3591708	Shoot apex	93.668
	SRR3591709	Stem	71.335
	SRR3591710	White floral bud	63.287
	SRR3591711	White flower	67.874
	SRR3591712	Green floral bud	99.056
	SRR3591713	Yellow flower	66.566
SRP173429	SRR8316895	Juvenile bud stage	53.708
	SRR8316896	Juvenile bud stage	68.122
	SRR8316897	Juvenile bud stage	29.237
	SRR8316894	Third green stage	24.587
	SRR8316900	Third green stage	92.901
	SRR8316901	Third green stage	88.553
	SRR8316898	Complete white stage	26.461
	SRR8316899	Complete white stage	89.800
	SRR8316903	Complete white stage	35.027
	SRR8316902	Silver flowering stage	17.608
	SRR8316904	Silver flowering stage	16.160
	SRR8316905	Silver flowering stage	9.668
	SRR8316906	Gold flowering stage	31.705
	SRR8316907	Gold flowering stage	42.425
	SRR8316908	Gold flowering stage	33.108
SRP132670	SRR6706286	Control	79.300
	SRR6706287	Light intensity 50%	80.159
	SRR6706288	Light intensity 20%	85.919
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.205
	CNS0095593	Slightly white alabastrum(diploid) 2	78.615
	CNS0095594	Slightly white alabastrum(diploid) 3	64.841
	CNS0095595	Whole white alabastrum(diploid) 2	63.082
	CNS0095596	Whole white alabastrum(diploid) 3	67.477
	CNS0095597	Whole white alabastrum(diploid) 4	52.229
	CNS0095598	Silvery flower (diploied) 1	70.007
	CNS0095599	Silvery flower (diploied) 2	69.628
	CNS0095600	Silvery flower (diploied) 3	66.076
	CNS0095601	Golden flower (diploid) 1	74.039
	CNS0095602	Golden flower (diploid) 2	70.336
	CNS0095603	Golden flower (diploid) 3	68.580
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.473
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.621
	CNS0095606	Slightly white alabastrum(tetraploid) 3	110.458
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	86.790
	CNS0095610	Silvery flower (tetraploid) 1	70.219
	CNS0095611	Silvery flower (tetraploid) 2	87.392
	CNS0095612	Silvery flower (tetraploid) 3	58.689
	CNS0095613	Golden flower (tetraploid) 1	43.529
	CNS0095614	Golden flower (tetraploid) 2	70.287
	CNS0095615	Golden flower (tetraploid) 3	28.807
CRA001975	CRR073297	Stem 1	67.533
	CRR073298	Stem 2	71.979
	CRR073299	Stem 3	84.343
	CRR073300	Leaf 1	82.994
	CRR073301	Leaf 2	73.685
	CRR073302	Leaf 3	99.664
	CRR073303	Juvenile bud 1	108.387
	CRR073304	Juvenile bud 2	87.147
	CRR073305	Juvenile bud 3	105.380
	CRR073306	Third green 1	29.482
	CRR073307	Third green 2	19.975
	CRR073308	Third green 3	19.689
	CRR073309	Second white 1	26.872
	CRR073310	Second white 2	10.113
	CRR073311	Second white 3	8.598
	CRR073312	Silver flowering 1	4.891
	CRR073313	Silver flowering 2	9.818
	CRR073314	Silver flowering 3	4.914
	CRR073315	Gold flowering 1	24.300
	CRR073316	Gold flowering 2	27.274
	CRR073317	Gold flowering 3	29.610
	CRR073318	Tawny withering 1	56.577
	CRR073319	Tawny withering 2	38.757
	CRR073320	Tawny withering 3	54.608