Detail information of GWHGAAZE012690


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276600.10PREDICTED: importin subunit beta-1 [Vitis vinifera]
Swissprottr|Q9FJD4|IMB1_ARATH0Importin subunit beta-1 {ECO:0000305}
trEMBLtr|E0CV68|E0CV68_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI23029.3}
TAIR10AT5G53480.10ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8990141389904114-
GWHAAZE00000003mRNA8990141389904114-
GWHAAZE00000003exon8990141389901611-
GWHAAZE00000003exon8990170189904114-
GWHAAZE00000003CDS8990170189904114-
GWHAAZE00000003CDS8990141389901611-
Transcript Sequence

Network for GWHGAAZE012690

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03810.20IBN_N231021.20E-12
PF13513.7HEAT_EZ3804365.20E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14293KPNB1, IPO1 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0008536molecular_functionRan GTPase binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE012690.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.608
SRR3591706second leaf24.172
SRR3591707mature leaf30.034
SRR3591708Shoot apex26.056
SRR3591709Stem40.213
SRR3591710White floral bud45.815
SRR3591711White flower54.649
SRR3591712Green floral bud46.588
SRR3591713Yellow flower56.164
SRP173429 SRR8316895Juvenile bud stage 19.876
SRR8316896Juvenile bud stage 26.891
SRR8316897Juvenile bud stage 11.491
SRR8316894Third green stage 14.843
SRR8316900Third green stage 42.382
SRR8316901Third green stage 34.594
SRR8316898Complete white stage 17.653
SRR8316899Complete white stage 55.039
SRR8316903Complete white stage 35.537
SRR8316902Silver flowering stage15.960
SRR8316904Silver flowering stage28.822
SRR8316905Silver flowering stage13.296
SRR8316906Gold flowering stage 45.922
SRR8316907Gold flowering stage 34.889
SRR8316908Gold flowering stage 39.970
SRP132670SRR6706286Control51.764
SRR6706287Light intensity 50%52.832
SRR6706288Light intensity 20%59.316
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.648
CNS0095593Slightly white alabastrum(diploid) 210.974
CNS0095594Slightly white alabastrum(diploid) 313.062
CNS0095595Whole white alabastrum(diploid) 213.563
CNS0095596Whole white alabastrum(diploid) 312.900
CNS0095597Whole white alabastrum(diploid) 412.119
CNS0095598Silvery flower (diploied) 118.893
CNS0095599Silvery flower (diploied) 214.662
CNS0095600Silvery flower (diploied) 359.941
CNS0095601Golden flower (diploid) 115.956
CNS0095602Golden flower (diploid) 266.780
CNS0095603Golden flower (diploid) 362.130
CNS0095604Slightly white alabastrum(tetraploid) 119.479
CNS0095605Slightly white alabastrum(tetraploid) 215.030
CNS0095606Slightly white alabastrum(tetraploid) 358.183
CNS0095607Whole white alabastrum(tetraploid) 112.546
CNS0095608Whole white alabastrum(tetraploid) 210.629
CNS0095609Whole white alabastrum(tetraploid) 346.470
CNS0095610Silvery flower (tetraploid) 157.861
CNS0095611Silvery flower (tetraploid) 261.257
CNS0095612Silvery flower (tetraploid) 360.572
CNS0095613Golden flower (tetraploid) 123.545
CNS0095614Golden flower (tetraploid) 254.585
CNS0095615Golden flower (tetraploid) 361.487
CRA001975CRR073297Stem 148.464
CRR073298Stem 249.257
CRR073299Stem 344.589
CRR073300Leaf 166.807
CRR073301Leaf 248.780
CRR073302Leaf 348.091
CRR073303Juvenile bud 156.204
CRR073304Juvenile bud 241.406
CRR073305Juvenile bud 391.133
CRR073306Third green 142.919
CRR073307Third green 238.911
CRR073308Third green 342.330
CRR073309Second white 133.925
CRR073310Second white 234.681
CRR073311Second white 341.859
CRR073312Silver flowering 142.005
CRR073313Silver flowering 241.066
CRR073314Silver flowering 334.119
CRR073315Gold flowering 114.084
CRR073316Gold flowering 224.107
CRR073317Gold flowering 322.183
CRR073318Tawny withering 141.716
CRR073319Tawny withering 226.948
CRR073320Tawny withering 338.066