Detail information of GWHGAAZE012694


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271917.20PREDICTED: WD repeat-containing protein YMR102C [Vitis vinifera]
trEMBLtr|F6H7B5|F6H7B5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48060.1}
TAIR10AT5G24320.12E-158Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8995598789960069-
GWHAAZE00000003mRNA8995598789960069-
GWHAAZE00000003exon8995598789956507-
GWHAAZE00000003exon8995724389957336-
GWHAAZE00000003exon8995742489957503-
GWHAAZE00000003exon8995792789957978-
GWHAAZE00000003exon8995808089958223-
GWHAAZE00000003exon8995839989958551-
GWHAAZE00000003exon8995896989960069-
GWHAAZE00000003CDS8995896989960069-
GWHAAZE00000003CDS8995839989958551-
GWHAAZE00000003CDS8995808089958223-
GWHAAZE00000003CDS8995792789957978-
GWHAAZE00000003CDS8995742489957503-
GWHAAZE00000003CDS8995724389957336-
GWHAAZE00000003CDS8995598789956507-
Transcript Sequence

Network for GWHGAAZE012694

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402482788.80E-05
PF00400.33WD403463812.30E-07
PF00400.33WD405505740.18
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.943
SRR3591706second leaf15.420
SRR3591707mature leaf8.810
SRR3591708Shoot apex16.405
SRR3591709Stem11.652
SRR3591710White floral bud18.288
SRR3591711White flower9.325
SRR3591712Green floral bud22.226
SRR3591713Yellow flower6.827
SRP173429 SRR8316895Juvenile bud stage 6.895
SRR8316896Juvenile bud stage 7.692
SRR8316897Juvenile bud stage 3.134
SRR8316894Third green stage 5.898
SRR8316900Third green stage 14.495
SRR8316901Third green stage 14.128
SRR8316898Complete white stage 5.559
SRR8316899Complete white stage 13.640
SRR8316903Complete white stage 11.034
SRR8316902Silver flowering stage3.940
SRR8316904Silver flowering stage5.448
SRR8316905Silver flowering stage2.106
SRR8316906Gold flowering stage 8.032
SRR8316907Gold flowering stage 5.804
SRR8316908Gold flowering stage 8.184
SRP132670SRR6706286Control12.962
SRR6706287Light intensity 50%14.884
SRR6706288Light intensity 20%14.972
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.607
CNS0095593Slightly white alabastrum(diploid) 27.917
CNS0095594Slightly white alabastrum(diploid) 36.348
CNS0095595Whole white alabastrum(diploid) 211.239
CNS0095596Whole white alabastrum(diploid) 312.953
CNS0095597Whole white alabastrum(diploid) 411.079
CNS0095598Silvery flower (diploied) 14.946
CNS0095599Silvery flower (diploied) 23.948
CNS0095600Silvery flower (diploied) 38.909
CNS0095601Golden flower (diploid) 14.736
CNS0095602Golden flower (diploid) 211.352
CNS0095603Golden flower (diploid) 39.809
CNS0095604Slightly white alabastrum(tetraploid) 112.814
CNS0095605Slightly white alabastrum(tetraploid) 211.634
CNS0095606Slightly white alabastrum(tetraploid) 318.691
CNS0095607Whole white alabastrum(tetraploid) 113.995
CNS0095608Whole white alabastrum(tetraploid) 216.162
CNS0095609Whole white alabastrum(tetraploid) 319.341
CNS0095610Silvery flower (tetraploid) 110.386
CNS0095611Silvery flower (tetraploid) 29.238
CNS0095612Silvery flower (tetraploid) 312.694
CNS0095613Golden flower (tetraploid) 13.435
CNS0095614Golden flower (tetraploid) 27.333
CNS0095615Golden flower (tetraploid) 310.758
CRA001975CRR073297Stem 115.445
CRR073298Stem 213.019
CRR073299Stem 310.315
CRR073300Leaf 117.755
CRR073301Leaf 214.871
CRR073302Leaf 39.203
CRR073303Juvenile bud 112.490
CRR073304Juvenile bud 27.629
CRR073305Juvenile bud 312.924
CRR073306Third green 113.036
CRR073307Third green 27.986
CRR073308Third green 310.548
CRR073309Second white 14.188
CRR073310Second white 25.967
CRR073311Second white 37.925
CRR073312Silver flowering 15.614
CRR073313Silver flowering 24.566
CRR073314Silver flowering 35.668
CRR073315Gold flowering 13.858
CRR073316Gold flowering 27.519
CRR073317Gold flowering 35.968
CRR073318Tawny withering 18.878
CRR073319Tawny withering 26.914
CRR073320Tawny withering 37.497