Detail information of GWHGAAZE012695


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011075951.10PREDICTED: histone-lysine N-methyltransferase ATXR6 [Sesamum indicum]
Swissprottr|Q9FNE9|ATXR6_ARATH2E-175Histone-lysine N-methyltransferase ATXR6
trEMBLtr|B9I1Y7|B9I1Y7_POPTR0PHD finger family protein {ECO:0000313|EMBL:EEE96662.2} (Fragment)
TAIR10AT5G24330.14E-134ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8997863389982993-
GWHAAZE00000003mRNA8997863389982993-
GWHAAZE00000003exon8997863389978792-
GWHAAZE00000003exon8997991489980126-
GWHAAZE00000003exon8998023889980338-
GWHAAZE00000003exon8998149889981727-
GWHAAZE00000003exon8998183889981927-
GWHAAZE00000003exon8998275089982993-
GWHAAZE00000003CDS8998275089982993-
GWHAAZE00000003CDS8998183889981927-
GWHAAZE00000003CDS8998149889981727-
GWHAAZE00000003CDS8998023889980338-
GWHAAZE00000003CDS8997991489980126-
GWHAAZE00000003CDS8997863389978792-
Transcript Sequence

Network for GWHGAAZE012695

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD30761.40E-09
PF00856.29SET2493331.10E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.470
SRR3591706second leaf0.501
SRR3591707mature leaf0.600
SRR3591708Shoot apex6.617
SRR3591709Stem0.430
SRR3591710White floral bud0.076
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.344
SRR8316896Juvenile bud stage 0.439
SRR8316897Juvenile bud stage 0.318
SRR8316894Third green stage 0.065
SRR8316900Third green stage 0.315
SRR8316901Third green stage 0.375
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.189
SRR8316903Complete white stage 0.096
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.117
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.089
SRP132670SRR6706286Control0.358
SRR6706287Light intensity 50%0.316
SRR6706288Light intensity 20%0.306
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.982
CNS0095593Slightly white alabastrum(diploid) 20.874
CNS0095594Slightly white alabastrum(diploid) 30.727
CNS0095595Whole white alabastrum(diploid) 20.043
CNS0095596Whole white alabastrum(diploid) 30.497
CNS0095597Whole white alabastrum(diploid) 40.075
CNS0095598Silvery flower (diploied) 10.177
CNS0095599Silvery flower (diploied) 20.459
CNS0095600Silvery flower (diploied) 30.130
CNS0095601Golden flower (diploid) 10.082
CNS0095602Golden flower (diploid) 20.062
CNS0095603Golden flower (diploid) 30.027
CNS0095604Slightly white alabastrum(tetraploid) 11.031
CNS0095605Slightly white alabastrum(tetraploid) 21.061
CNS0095606Slightly white alabastrum(tetraploid) 31.269
CNS0095607Whole white alabastrum(tetraploid) 10.504
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.358
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.074
CNS0095612Silvery flower (tetraploid) 30.077
CNS0095613Golden flower (tetraploid) 10.039
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.599
CRR073298Stem 20.179
CRR073299Stem 30.587
CRR073300Leaf 10.343
CRR073301Leaf 20.112
CRR073302Leaf 30.040
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.232
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.059
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.467