Detail information of GWHGAAZE012705


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006441185.13.4199E-177hypothetical protein CICLE_v10021339mg [Citrus clementina]
Swissprottr|Q9FJD0|VP26A_ARATH2E-173Vacuolar protein sorting-associated protein 26A
trEMBLtr|A0A067F8B8|A0A067F8B8_CITSI1E-177Uncharacterized protein {ECO:0000313|EMBL:KDO59682.1}
TAIR10AT5G53530.11E-137vacuolar protein sorting 26A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9011655390123960-
GWHAAZE00000003mRNA9011655390123960-
GWHAAZE00000003exon9012395890123960-
GWHAAZE00000003exon9012376290123836-
GWHAAZE00000003exon9012174090121812-
GWHAAZE00000003exon9012108990121133-
GWHAAZE00000003exon9012083190120942-
GWHAAZE00000003exon9011905990119101-
GWHAAZE00000003exon9011842490118468-
GWHAAZE00000003exon9011814490118199-
GWHAAZE00000003exon9011769990117874-
GWHAAZE00000003exon9011655390116731-
GWHAAZE00000003CDS9012395890123960-
GWHAAZE00000003CDS9012376290123836-
GWHAAZE00000003CDS9012174090121812-
GWHAAZE00000003CDS9012108990121133-
GWHAAZE00000003CDS9012083190120942-
GWHAAZE00000003CDS9011905990119101-
GWHAAZE00000003CDS9011842490118468-
GWHAAZE00000003CDS9011814490118199-
GWHAAZE00000003CDS9011769990117874-
GWHAAZE00000003CDS9011655390116731-
Transcript Sequence

Network for GWHGAAZE012705

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03643.16Vps26272504.50E-105
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18466VPS26 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.783
SRR3591706second leaf29.494
SRR3591707mature leaf37.635
SRR3591708Shoot apex50.916
SRR3591709Stem55.288
SRR3591710White floral bud69.872
SRR3591711White flower96.379
SRR3591712Green floral bud60.892
SRR3591713Yellow flower114.742
SRP173429 SRR8316895Juvenile bud stage 36.190
SRR8316896Juvenile bud stage 51.738
SRR8316897Juvenile bud stage 26.148
SRR8316894Third green stage 20.559
SRR8316900Third green stage 73.422
SRR8316901Third green stage 65.654
SRR8316898Complete white stage 34.369
SRR8316899Complete white stage 89.759
SRR8316903Complete white stage 62.812
SRR8316902Silver flowering stage52.510
SRR8316904Silver flowering stage71.975
SRR8316905Silver flowering stage30.653
SRR8316906Gold flowering stage 120.484
SRR8316907Gold flowering stage 104.972
SRR8316908Gold flowering stage 116.724
SRP132670SRR6706286Control71.351
SRR6706287Light intensity 50%72.420
SRR6706288Light intensity 20%74.259
CNP0000432CNS0095592Slightly white alabastrum(diploid) 144.775
CNS0095593Slightly white alabastrum(diploid) 249.149
CNS0095594Slightly white alabastrum(diploid) 348.063
CNS0095595Whole white alabastrum(diploid) 244.295
CNS0095596Whole white alabastrum(diploid) 341.911
CNS0095597Whole white alabastrum(diploid) 443.114
CNS0095598Silvery flower (diploied) 147.645
CNS0095599Silvery flower (diploied) 246.496
CNS0095600Silvery flower (diploied) 3110.715
CNS0095601Golden flower (diploid) 149.469
CNS0095602Golden flower (diploid) 2100.199
CNS0095603Golden flower (diploid) 397.210
CNS0095604Slightly white alabastrum(tetraploid) 155.145
CNS0095605Slightly white alabastrum(tetraploid) 242.683
CNS0095606Slightly white alabastrum(tetraploid) 359.616
CNS0095607Whole white alabastrum(tetraploid) 135.993
CNS0095608Whole white alabastrum(tetraploid) 237.060
CNS0095609Whole white alabastrum(tetraploid) 362.172
CNS0095610Silvery flower (tetraploid) 1112.497
CNS0095611Silvery flower (tetraploid) 2107.034
CNS0095612Silvery flower (tetraploid) 3103.959
CNS0095613Golden flower (tetraploid) 187.879
CNS0095614Golden flower (tetraploid) 299.275
CNS0095615Golden flower (tetraploid) 3121.349
CRA001975CRR073297Stem 155.510
CRR073298Stem 244.887
CRR073299Stem 352.267
CRR073300Leaf 161.526
CRR073301Leaf 266.455
CRR073302Leaf 359.155
CRR073303Juvenile bud 178.850
CRR073304Juvenile bud 273.500
CRR073305Juvenile bud 377.069
CRR073306Third green 152.671
CRR073307Third green 257.262
CRR073308Third green 355.351
CRR073309Second white 179.784
CRR073310Second white 290.290
CRR073311Second white 384.740
CRR073312Silver flowering 189.908
CRR073313Silver flowering 285.789
CRR073314Silver flowering 382.354
CRR073315Gold flowering 142.974
CRR073316Gold flowering 249.918
CRR073317Gold flowering 336.021
CRR073318Tawny withering 153.991
CRR073319Tawny withering 262.909
CRR073320Tawny withering 359.090