Gene detail

Detail information of GWHGAAZE012711

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075917.1	3.7739E-108	PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Sesamum indicum]
Swissprot	tr\|Q69NG5\|6PGL4_ORYSJ	2E-90	Probable 6-phosphogluconolactonase 4, chloroplastic (Precursor)
trEMBL	tr\|A0A022RXR9\|A0A022RXR9_ERYGU	7E-107	Uncharacterized protein {ECO:0000313\|EMBL:EYU45302.1}
TAIR10	AT5G24400.1	4E-73	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90194169	90198093	-
GWHAAZE00000003	mRNA	90194169	90198093	-
GWHAAZE00000003	exon	90197933	90198093	-
GWHAAZE00000003	exon	90194892	90195027	-
GWHAAZE00000003	exon	90194169	90194633	-
GWHAAZE00000003	CDS	90197933	90198093	-
GWHAAZE00000003	CDS	90194892	90195027	-
GWHAAZE00000003	CDS	90194169	90194633	-

Transcript Sequence
>GWHTAAZE012725 ATGGCGGAAAAATGCAAATCCCCTGTTTTCATATACAAAAGCGAGGAAGAAGTGGCTGTGGCATTGGCCCCATACATTGCGGATCTATCAGCTAAATTTATCAAAGAGAAAGGGTCTTTCTCCGTTGTTTTATCCGGGGGTTCCATGATCGATACCATGAGAAAATTATTGGAGCCTCCATATATTCATAGTGTGGATTGGTCGAAATGGATGATTTTCTTCTTGGATGAGAGGGTTGTTCCATTGACTGACCCAGATAGCAATTATAAACTTGCTTATGATGGGTTACTCTCCAAGGTACCCATCCCGAAAGATAACATTTATCCCATCACTGAAAAACTATCACCCGAGGATGCGGCTGATGATTATGAGGCTCGTCTAAAAAACCTGGTCAATTGCAATAAACTACAGCCAAATGCAAGCGGGTTCCCAAAATTCGACCTTAATCTCGTAGGCATGGGACCTGAGGGACATGTAGCTTCTCTGTTTTGTTGGCACTTTCAACGCTACGAGAAAGAACGATGGGTCACCTTCATCAAGGACTCGCCAAAATTACCCGCGGAAAGGATCACTTTCACCTTTCCGGTCATTAATGCGTCTTCAAATATTGGACTTGTTATTACCGGGGACGAGGCGGCCTATGCAGTTAAAGTAGCGCTAGGTAATAACTCTTCCGATCATATCCCTTTACCGGTTCAAATGGTTGCTCCTGAGGGGAACTTGACTTGGTTTCTAGACCACGATGCTGCTTCAAAACTCTAG

Network for GWHGAAZE012711

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01182.21	Glucosamine_iso	14	243	2.50E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01057	PGLS, pgl, devB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0017057	molecular_function	6-phosphogluconolactonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.170
	SRR3591706	second leaf	24.046
	SRR3591707	mature leaf	87.940
	SRR3591708	Shoot apex	94.743
	SRR3591709	Stem	19.384
	SRR3591710	White floral bud	354.256
	SRR3591711	White flower	338.947
	SRR3591712	Green floral bud	187.039
	SRR3591713	Yellow flower	528.371
SRP173429	SRR8316895	Juvenile bud stage	28.988
	SRR8316896	Juvenile bud stage	26.642
	SRR8316897	Juvenile bud stage	26.197
	SRR8316894	Third green stage	7.059
	SRR8316900	Third green stage	32.981
	SRR8316901	Third green stage	56.077
	SRR8316898	Complete white stage	103.298
	SRR8316899	Complete white stage	75.238
	SRR8316903	Complete white stage	228.408
	SRR8316902	Silver flowering stage	221.490
	SRR8316904	Silver flowering stage	207.368
	SRR8316905	Silver flowering stage	133.786
	SRR8316906	Gold flowering stage	709.831
	SRR8316907	Gold flowering stage	857.619
	SRR8316908	Gold flowering stage	835.906
SRP132670	SRR6706286	Control	68.505
	SRR6706287	Light intensity 50%	45.232
	SRR6706288	Light intensity 20%	20.956
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	87.271
	CNS0095593	Slightly white alabastrum(diploid) 2	44.016
	CNS0095594	Slightly white alabastrum(diploid) 3	85.988
	CNS0095595	Whole white alabastrum(diploid) 2	53.551
	CNS0095596	Whole white alabastrum(diploid) 3	39.465
	CNS0095597	Whole white alabastrum(diploid) 4	92.580
	CNS0095598	Silvery flower (diploied) 1	775.842
	CNS0095599	Silvery flower (diploied) 2	396.209
	CNS0095600	Silvery flower (diploied) 3	289.994
	CNS0095601	Golden flower (diploid) 1	832.006
	CNS0095602	Golden flower (diploid) 2	1133.812
	CNS0095603	Golden flower (diploid) 3	1072.902
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.337
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.058
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.546
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.851
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.172
	CNS0095610	Silvery flower (tetraploid) 1	365.456
	CNS0095611	Silvery flower (tetraploid) 2	232.872
	CNS0095612	Silvery flower (tetraploid) 3	258.717
	CNS0095613	Golden flower (tetraploid) 1	589.430
	CNS0095614	Golden flower (tetraploid) 2	642.249
	CNS0095615	Golden flower (tetraploid) 3	148.122
CRA001975	CRR073297	Stem 1	45.378
	CRR073298	Stem 2	47.936
	CRR073299	Stem 3	67.246
	CRR073300	Leaf 1	13.189
	CRR073301	Leaf 2	11.168
	CRR073302	Leaf 3	11.562
	CRR073303	Juvenile bud 1	6.110
	CRR073304	Juvenile bud 2	31.374
	CRR073305	Juvenile bud 3	18.986
	CRR073306	Third green 1	8.190
	CRR073307	Third green 2	10.802
	CRR073308	Third green 3	9.490
	CRR073309	Second white 1	113.854
	CRR073310	Second white 2	73.869
	CRR073311	Second white 3	75.822
	CRR073312	Silver flowering 1	97.740
	CRR073313	Silver flowering 2	131.442
	CRR073314	Silver flowering 3	181.839
	CRR073315	Gold flowering 1	3.982
	CRR073316	Gold flowering 2	32.310
	CRR073317	Gold flowering 3	76.841
	CRR073318	Tawny withering 1	41.183
	CRR073319	Tawny withering 2	66.258
	CRR073320	Tawny withering 3	31.374