Detail information of GWHGAAZE012712


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGJ76609.10protein phosphatase 2C [Ilex paraguariensis]
Swissprottr|P49599|P2C57_ARATH2E-145Protein phosphatase 2C 57
trEMBLtr|M9VDY5|M9VDY5_9AQUA0Protein phosphatase 2C {ECO:0000313|EMBL:AGJ76609.1}
TAIR10AT4G27800.12E-115thylakoid-associated phosphatase 38

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9022570190232929-
GWHAAZE00000003mRNA9022570190232929-
GWHAAZE00000003exon9023261690232929-
GWHAAZE00000003exon9022992690230147-
GWHAAZE00000003exon9022968190229783-
GWHAAZE00000003exon9022916090229270-
GWHAAZE00000003exon9022834790228426-
GWHAAZE00000003exon9022723290227348-
GWHAAZE00000003exon9022690490226991-
GWHAAZE00000003exon9022664490226657-
GWHAAZE00000003exon9022570190225824-
GWHAAZE00000003CDS9023261690232929-
GWHAAZE00000003CDS9022992690230147-
GWHAAZE00000003CDS9022968190229783-
GWHAAZE00000003CDS9022916090229270-
GWHAAZE00000003CDS9022834790228426-
GWHAAZE00000003CDS9022723290227348-
GWHAAZE00000003CDS9022690490226991-
GWHAAZE00000003CDS9022664490226657-
GWHAAZE00000003CDS9022570190225824-
Transcript Sequence

Network for GWHGAAZE012712

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.22PP2C603461.10E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04457PPM1A, PP2CA MAPK signaling pathway map04010

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0043169molecular_functioncation binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.802
SRR3591706second leaf77.192
SRR3591707mature leaf132.166
SRR3591708Shoot apex35.708
SRR3591709Stem29.174
SRR3591710White floral bud17.794
SRR3591711White flower8.701
SRR3591712Green floral bud12.687
SRR3591713Yellow flower5.691
SRP173429 SRR8316895Juvenile bud stage 13.209
SRR8316896Juvenile bud stage 17.247
SRR8316897Juvenile bud stage 9.459
SRR8316894Third green stage 8.227
SRR8316900Third green stage 19.753
SRR8316901Third green stage 18.454
SRR8316898Complete white stage 5.873
SRR8316899Complete white stage 23.994
SRR8316903Complete white stage 11.252
SRR8316902Silver flowering stage3.564
SRR8316904Silver flowering stage6.916
SRR8316905Silver flowering stage3.559
SRR8316906Gold flowering stage 10.941
SRR8316907Gold flowering stage 8.110
SRR8316908Gold flowering stage 9.323
SRP132670SRR6706286Control13.253
SRR6706287Light intensity 50%10.556
SRR6706288Light intensity 20%12.117
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.516
CNS0095593Slightly white alabastrum(diploid) 27.538
CNS0095594Slightly white alabastrum(diploid) 311.538
CNS0095595Whole white alabastrum(diploid) 212.112
CNS0095596Whole white alabastrum(diploid) 310.421
CNS0095597Whole white alabastrum(diploid) 413.127
CNS0095598Silvery flower (diploied) 124.326
CNS0095599Silvery flower (diploied) 215.646
CNS0095600Silvery flower (diploied) 312.026
CNS0095601Golden flower (diploid) 118.903
CNS0095602Golden flower (diploid) 214.591
CNS0095603Golden flower (diploid) 312.719
CNS0095604Slightly white alabastrum(tetraploid) 110.091
CNS0095605Slightly white alabastrum(tetraploid) 28.016
CNS0095606Slightly white alabastrum(tetraploid) 310.559
CNS0095607Whole white alabastrum(tetraploid) 18.774
CNS0095608Whole white alabastrum(tetraploid) 28.475
CNS0095609Whole white alabastrum(tetraploid) 37.236
CNS0095610Silvery flower (tetraploid) 19.338
CNS0095611Silvery flower (tetraploid) 212.897
CNS0095612Silvery flower (tetraploid) 316.677
CNS0095613Golden flower (tetraploid) 18.581
CNS0095614Golden flower (tetraploid) 29.838
CNS0095615Golden flower (tetraploid) 38.611
CRA001975CRR073297Stem 124.755
CRR073298Stem 223.157
CRR073299Stem 318.690
CRR073300Leaf 116.108
CRR073301Leaf 212.760
CRR073302Leaf 310.661
CRR073303Juvenile bud 114.626
CRR073304Juvenile bud 28.879
CRR073305Juvenile bud 314.102
CRR073306Third green 15.403
CRR073307Third green 27.936
CRR073308Third green 34.533
CRR073309Second white 114.806
CRR073310Second white 28.734
CRR073311Second white 311.280
CRR073312Silver flowering 111.263
CRR073313Silver flowering 28.462
CRR073314Silver flowering 38.875
CRR073315Gold flowering 1150.658
CRR073316Gold flowering 2174.661
CRR073317Gold flowering 3133.969
CRR073318Tawny withering 120.321
CRR073319Tawny withering 217.034
CRR073320Tawny withering 323.100