Gene detail

Detail information of GWHGAAZE012735

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268568.1	6.1785E-126	PREDICTED: zinc finger protein CONSTANS-LIKE 1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FHH8\|COL5_ARATH	0.00000002	Zinc finger protein CONSTANS-LIKE 5
trEMBL	tr\|E0CVH7\|E0CVH7_VITVI	2E-126	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23138.3}
TAIR10	AT5G53420.1	1E-53	CCT motif family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90634563	90638831	+
GWHAAZE00000003	mRNA	90634563	90638831	+
GWHAAZE00000003	exon	90634563	90634664	+
GWHAAZE00000003	exon	90636791	90637294	+
GWHAAZE00000003	exon	90637954	90638079	+
GWHAAZE00000003	exon	90638739	90638831	+
GWHAAZE00000003	CDS	90634563	90634664	+
GWHAAZE00000003	CDS	90636791	90637294	+
GWHAAZE00000003	CDS	90637954	90638079	+
GWHAAZE00000003	CDS	90638739	90638831	+

Transcript Sequence
>GWHTAAZE012749 ATGTTTGCAGAAACCGGACTTCTCTTCCCTTACTTTCAGACCTTCTCCCAAGTTCAACAACTGGATGAATTCTGTCGCTCTCATAAATCCAGTGGTTCATTGGCAAACCTGGTACAAACCTCCACCATATCAGAATATGACCTCGGGGGAGAAGGAGATCTTTTCAAAGCTCCAGAACCAATTATTGAAGAACCGATTGTCGGCATCGATCCCATGACCGCTGCCATTTCAATGATCTCTTTTGGAGAAGATGCCATATCCCCTCAATCACTCAAAATTGCAGATATCGAATCAATGGGAAGTGCTCAACTTCTTAGTGAGGTTTTCTATGAATGTAAAAGAGATCTGTTGGCAAAGGAAGAAACGGAAACACCAGTTTCCATGGTTCTCAATATTACTACACCCATTGCAAAGTCAGATGAAAACCTCGTTACAGAGGAAAAATTACTTCCTCCAGGGGCATTTTCAAAAAGTGTTAGCTCTAGGTATCTAAGTTCAATGGAGTGGATTCCCGGTGATCCTATTGGGCCGAATTTTCTGGATTTCCATGGAATGGACTTTGAAATTTACGGGATGCGAAGGGCATTCAGTGAAGGGGACATAAAGAATCTTGCTAATGGTAGCATGAGCCTCGGGCAGCCGCAGCTTATCAGCAGCAATGAAACTCGGAAGCAAAAGCTTTCCAGATATTGGAATAAGAAGTCAAAGAGAAATTTTGGCAGGAAAATTAAGTATGCTTGCAGGAAGGCTCTGGCGGACAGTCAGCCAAGGATCCGAGGAAGGTTTGCCAAAACTGACGAATCCGAAATTGCAAAAAAGCAGTAA

Network for GWHGAAZE012735

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	223	265	6.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.884
	SRR3591706	second leaf	6.942
	SRR3591707	mature leaf	8.675
	SRR3591708	Shoot apex	19.118
	SRR3591709	Stem	39.811
	SRR3591710	White floral bud	8.867
	SRR3591711	White flower	21.611
	SRR3591712	Green floral bud	7.365
	SRR3591713	Yellow flower	14.475
SRP173429	SRR8316895	Juvenile bud stage	9.511
	SRR8316896	Juvenile bud stage	11.873
	SRR8316897	Juvenile bud stage	3.012
	SRR8316894	Third green stage	2.929
	SRR8316900	Third green stage	3.285
	SRR8316901	Third green stage	4.592
	SRR8316898	Complete white stage	2.458
	SRR8316899	Complete white stage	6.012
	SRR8316903	Complete white stage	5.752
	SRR8316902	Silver flowering stage	8.115
	SRR8316904	Silver flowering stage	8.603
	SRR8316905	Silver flowering stage	4.345
	SRR8316906	Gold flowering stage	14.551
	SRR8316907	Gold flowering stage	9.356
	SRR8316908	Gold flowering stage	11.393
SRP132670	SRR6706286	Control	4.400
	SRR6706287	Light intensity 50%	4.697
	SRR6706288	Light intensity 20%	4.795
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.009
	CNS0095593	Slightly white alabastrum(diploid) 2	3.324
	CNS0095594	Slightly white alabastrum(diploid) 3	4.354
	CNS0095595	Whole white alabastrum(diploid) 2	3.185
	CNS0095596	Whole white alabastrum(diploid) 3	2.738
	CNS0095597	Whole white alabastrum(diploid) 4	2.942
	CNS0095598	Silvery flower (diploied) 1	11.799
	CNS0095599	Silvery flower (diploied) 2	7.671
	CNS0095600	Silvery flower (diploied) 3	7.969
	CNS0095601	Golden flower (diploid) 1	8.660
	CNS0095602	Golden flower (diploid) 2	10.388
	CNS0095603	Golden flower (diploid) 3	9.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.008
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.194
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.578
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.620
	CNS0095610	Silvery flower (tetraploid) 1	10.892
	CNS0095611	Silvery flower (tetraploid) 2	12.903
	CNS0095612	Silvery flower (tetraploid) 3	9.685
	CNS0095613	Golden flower (tetraploid) 1	7.424
	CNS0095614	Golden flower (tetraploid) 2	8.464
	CNS0095615	Golden flower (tetraploid) 3	4.476
CRA001975	CRR073297	Stem 1	10.564
	CRR073298	Stem 2	5.268
	CRR073299	Stem 3	7.565
	CRR073300	Leaf 1	2.782
	CRR073301	Leaf 2	2.909
	CRR073302	Leaf 3	1.058
	CRR073303	Juvenile bud 1	2.661
	CRR073304	Juvenile bud 2	5.190
	CRR073305	Juvenile bud 3	1.556
	CRR073306	Third green 1	4.562
	CRR073307	Third green 2	4.015
	CRR073308	Third green 3	5.159
	CRR073309	Second white 1	4.906
	CRR073310	Second white 2	5.948
	CRR073311	Second white 3	7.154
	CRR073312	Silver flowering 1	8.446
	CRR073313	Silver flowering 2	5.197
	CRR073314	Silver flowering 3	3.443
	CRR073315	Gold flowering 1	5.193
	CRR073316	Gold flowering 2	6.539
	CRR073317	Gold flowering 3	5.578
	CRR073318	Tawny withering 1	7.455
	CRR073319	Tawny withering 2	4.939
	CRR073320	Tawny withering 3	11.535