Gene detail

Detail information of GWHGAAZE012739

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039003.1	6.3391E-99	RING/U-box superfamily protein, putative [Theobroma cacao]
Swissprot	tr\|P0CH02\|AT21B_ARATH	1E-50	Putative RING-H2 finger protein ATL21B (Precursor)
trEMBL	tr\|A0A061G8Y3\|A0A061G8Y3_THECC	2E-99	RING/U-box superfamily protein, putative {ECO:0000313\|EMBL:EOY23504.1}
TAIR10	AT5G53110.1	3E-59	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90738413	90741357	+
GWHAAZE00000003	mRNA	90738413	90741357	+
GWHAAZE00000003	exon	90738413	90738695	+
GWHAAZE00000003	exon	90740933	90741357	+
GWHAAZE00000003	CDS	90738413	90738695	+
GWHAAZE00000003	CDS	90740933	90741357	+

Transcript Sequence
>GWHTAAZE012753 CTTAATCCAATCGAGTGTCTTAGTGGTACTAATCATACAGTCTTTGCCACTTCTTCTAGCGGGGTCAGTAGTTTTTTGGCATCCGTTTGTGACTCGATAACGACGATTTCTGTACCGGTTCAGTGGCCATTTTTTGAGCAAGTTTTGAGTTCAGACCTTAGTGCTGACCTCCGGCTCGGTTGGGGTGCACCCAACTGTAGAAGGTGCGAGTCTAGAGGTGGAAGGTGCGGGTTCAAAAATAATTCTAGTCAAGAAATTGAATGCAAAAGTGTTGCTCAACGCGGACTTCCAAGAAGTGCTCGCTATGCCGTAAGTATAGGAGCCGGAGTACCGGCACTCATATTAATTGTTGGCCTTATATGTTTCATATGTAGTAGAGTGAAGTCTCGTGGCAGGAGACGCCACTTAGTCCACGAATCCGCCTTCGTTGTCGCCCCTCAGCCAACTCTGTCTATAGGACTCGAAAAGGAGACTATTGATTCTTACCCCAAAACAGTCCTCGGCGAGAGCCGGAGACTGCCCAAGCCCGATGATATCACTTGCCCAATATGCTTGTCCGAGTACAAGCCAAAGGAGACCCTAAGAAGCATTCCCGAATGTCAACATTGTTTCCACGCTGATTGCATCGATGAATGGCTTCATCGGAACGCCACCTGCCCAGTTTGCCGGAATTCTCCATCGAGATCATTGCCATCTCAAAACTTGTAA

Network for GWHGAAZE012739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14380.7	WAK_assoc	24	88	3.60E-08
PF13639.7	zf-RING_2	180	223	9.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.620
	SRR3591706	second leaf	0.257
	SRR3591707	mature leaf	0.556
	SRR3591708	Shoot apex	0.306
	SRR3591709	Stem	1.593
	SRR3591710	White floral bud	0.883
	SRR3591711	White flower	0.839
	SRR3591712	Green floral bud	0.428
	SRR3591713	Yellow flower	1.149
SRP173429	SRR8316895	Juvenile bud stage	0.336
	SRR8316896	Juvenile bud stage	0.308
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.641
	SRR8316901	Third green stage	0.360
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.571
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	2.933
	SRR8316904	Silver flowering stage	3.252
	SRR8316905	Silver flowering stage	2.325
	SRR8316906	Gold flowering stage	11.481
	SRR8316907	Gold flowering stage	13.111
	SRR8316908	Gold flowering stage	12.263
SRP132670	SRR6706286	Control	0.227
	SRR6706287	Light intensity 50%	0.307
	SRR6706288	Light intensity 20%	0.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.062
	CNS0095593	Slightly white alabastrum(diploid) 2	0.221
	CNS0095594	Slightly white alabastrum(diploid) 3	0.080
	CNS0095595	Whole white alabastrum(diploid) 2	0.368
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.900
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	1.323
	CNS0095601	Golden flower (diploid) 1	0.197
	CNS0095602	Golden flower (diploid) 2	0.502
	CNS0095603	Golden flower (diploid) 3	0.521
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	1.047
	CNS0095611	Silvery flower (tetraploid) 2	0.387
	CNS0095612	Silvery flower (tetraploid) 3	5.530
	CNS0095613	Golden flower (tetraploid) 1	1.766
	CNS0095614	Golden flower (tetraploid) 2	1.914
	CNS0095615	Golden flower (tetraploid) 3	4.826
CRA001975	CRR073297	Stem 1	0.545
	CRR073298	Stem 2	0.451
	CRR073299	Stem 3	0.852
	CRR073300	Leaf 1	0.685
	CRR073301	Leaf 2	0.534
	CRR073302	Leaf 3	0.555
	CRR073303	Juvenile bud 1	0.293
	CRR073304	Juvenile bud 2	0.323
	CRR073305	Juvenile bud 3	0.378
	CRR073306	Third green 1	16.796
	CRR073307	Third green 2	6.586
	CRR073308	Third green 3	9.146
	CRR073309	Second white 1	36.383
	CRR073310	Second white 2	40.668
	CRR073311	Second white 3	50.420
	CRR073312	Silver flowering 1	43.096
	CRR073313	Silver flowering 2	43.135
	CRR073314	Silver flowering 3	33.748
	CRR073315	Gold flowering 1	0.064
	CRR073316	Gold flowering 2	0.201
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.178
	CRR073319	Tawny withering 2	0.267
	CRR073320	Tawny withering 3	2.715