Gene detail

Detail information of GWHGAAZE012742

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002270689.1	PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q9M3B6\|PKP4_ARATH	Plastidial pyruvate kinase 4, chloroplastic (Precursor)
trEMBL	tr\|F6H6F4\|F6H6F4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47756.1}
TAIR10	AT3G49160.1	pyruvate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90785603	90786979	+
GWHAAZE00000003	mRNA	90785603	90786979	+
GWHAAZE00000003	exon	90785603	90786979	+
GWHAAZE00000003	CDS	90785603	90786979	+

Transcript Sequence
>GWHTAAZE012756 ATGAGGAAAAGGGCATCTTCAAATAGAGAGATACTGTTGGGCCCACTACAAGATGAGAGAACTACTCATATTATGGTAACAGTCGGTCAAGAAGTTACCGAGAGTGAAGCCCTTATTGATGATCTCCTCAAGAACGGGACCACCGTTATTCGTATCAACTGTGCACACGGGAACCCTAGTATCTGGAGTGAGATAATAAGAAGGGTGAAAAGAAGCTCTCAAATGCTGGAGAAACCATGCCGAATTCTCATGGACCTAGCAGGTCCGAAGCTTAGAACTGATAAAATGAAGGATGGTCCATGTGTGGCGAAATTATCTCCTAAGAAAAATGCTAGTGGAAATGTGATCTTTCCTGCCCAAGTTTGGCTCGCTCCCCAAGGGTCGGGTCCACCACCGGCACATTTATCCGCTGATCAAGTTCTTTACGTAGATGGCCAAGAGTTTCTTAACAAGGTTGAAGTAGGAGATACCGTGAGATTCTCGGATGCTAGAGGGAAACAAAGGGTGTTAAAGATTTCAAAAAAGTTCCCCATTTTTGGTGGCATTGGGTTCATGGCCGAGTGTACAAAGACTGCTTATGTTGAATCGGGAACAAGATTGTACATAAAACGAAACAAAAGGAAATCTTCAATTGGATTTGTGGTAGATGTCCTTCCGGTAGAGCGGTTTGTGAGACTTAAAGTTGGAGATTTGCTAAGCATATCTAGAGATAGCTCAAATGAACAAGAGGAATCGGCTTGTGGGACCCATAGGGTGAGTTGTTCTTCAGGTTATCTTTTTGATTCAGTCAAACCCGGAGAGCCAATTGCTTTTGATGATGGGAAAATATGGGGAGTTATTAAAGGAACGAGCATTTCGGAAATTATTGTTTCAATCACTCATGCGGACCCACGAGGTACCAAACTTGGGTCCGAAAAATCCATCAATATCCCAGAGAGTAATATAAGATATGATGGGCTGACTTCAAAGGATCTTGTGGATCTTGATTTTGTAGCAACCCATGCTGATATGGTGGGTATGTCTTTTGTTCGTGATGTTCGTGATATCATTGTGCTTCATCAAGAATTTCAAAAGCGAAAACTTTCAAAATTAGGGGTTGTTTTAAAGATCGAGACGAAAGGTGGGTTTATGAAACTGCCGTTAATTCTTTTGGAAGCGATGAAATGTTCGAACCCTTTGGGAGTTATGATTGCTAGGGGAGATCTTGCGGTGGAGTGTGGGTGGGAAAAGTTGGCGGATGTGCAGGAAGAGATATTGTCCATTTGTAGTGCTGCTCATGTACCGGTGATTTGGGCTACACAGGTTTTAGAGTCGATGGCTAAGACAGGTGTGCCTACTCGAGCTGAGATTACTGATGTGGCCAATGGAAGAAGGTAA

Network for GWHGAAZE012742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	20	172	3.40E-13
PF00224.22	PK	224	455	2.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004743	molecular_function	pyruvate kinase activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.250
	SRR3591706	second leaf	16.738
	SRR3591707	mature leaf	19.836
	SRR3591708	Shoot apex	14.280
	SRR3591709	Stem	14.071
	SRR3591710	White floral bud	28.686
	SRR3591711	White flower	46.144
	SRR3591712	Green floral bud	37.345
	SRR3591713	Yellow flower	47.845
SRP173429	SRR8316895	Juvenile bud stage	14.622
	SRR8316896	Juvenile bud stage	24.925
	SRR8316897	Juvenile bud stage	9.632
	SRR8316894	Third green stage	8.845
	SRR8316900	Third green stage	34.893
	SRR8316901	Third green stage	31.292
	SRR8316898	Complete white stage	15.621
	SRR8316899	Complete white stage	51.833
	SRR8316903	Complete white stage	23.305
	SRR8316902	Silver flowering stage	16.162
	SRR8316904	Silver flowering stage	22.538
	SRR8316905	Silver flowering stage	10.309
	SRR8316906	Gold flowering stage	53.731
	SRR8316907	Gold flowering stage	40.414
	SRR8316908	Gold flowering stage	43.330
SRP132670	SRR6706286	Control	19.963
	SRR6706287	Light intensity 50%	23.384
	SRR6706288	Light intensity 20%	26.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.464
	CNS0095593	Slightly white alabastrum(diploid) 2	17.712
	CNS0095594	Slightly white alabastrum(diploid) 3	15.618
	CNS0095595	Whole white alabastrum(diploid) 2	16.775
	CNS0095596	Whole white alabastrum(diploid) 3	18.012
	CNS0095597	Whole white alabastrum(diploid) 4	16.049
	CNS0095598	Silvery flower (diploied) 1	19.379
	CNS0095599	Silvery flower (diploied) 2	15.973
	CNS0095600	Silvery flower (diploied) 3	44.732
	CNS0095601	Golden flower (diploid) 1	14.562
	CNS0095602	Golden flower (diploid) 2	47.803
	CNS0095603	Golden flower (diploid) 3	39.464
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.666
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.109
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.051
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.403
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.874
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.240
	CNS0095610	Silvery flower (tetraploid) 1	46.970
	CNS0095611	Silvery flower (tetraploid) 2	54.672
	CNS0095612	Silvery flower (tetraploid) 3	46.183
	CNS0095613	Golden flower (tetraploid) 1	37.620
	CNS0095614	Golden flower (tetraploid) 2	52.505
	CNS0095615	Golden flower (tetraploid) 3	63.918
CRA001975	CRR073297	Stem 1	21.675
	CRR073298	Stem 2	20.099
	CRR073299	Stem 3	20.917
	CRR073300	Leaf 1	27.165
	CRR073301	Leaf 2	24.149
	CRR073302	Leaf 3	20.732
	CRR073303	Juvenile bud 1	27.822
	CRR073304	Juvenile bud 2	25.235
	CRR073305	Juvenile bud 3	27.838
	CRR073306	Third green 1	13.717
	CRR073307	Third green 2	10.296
	CRR073308	Third green 3	14.031
	CRR073309	Second white 1	25.298
	CRR073310	Second white 2	29.655
	CRR073311	Second white 3	40.308
	CRR073312	Silver flowering 1	32.171
	CRR073313	Silver flowering 2	31.444
	CRR073314	Silver flowering 3	22.565
	CRR073315	Gold flowering 1	19.403
	CRR073316	Gold flowering 2	19.647
	CRR073317	Gold flowering 3	16.307
	CRR073318	Tawny withering 1	6.143
	CRR073319	Tawny withering 2	8.566
	CRR073320	Tawny withering 3	7.606