Gene detail

Detail information of GWHGAAZE012751

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006350578.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like [Solanum tuberosum]
Swissprot	tr\|Q9FGM0\|FTSHB_ARATH	ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|M1AIH6\|M1AIH6_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400023505}
TAIR10	AT5G53170.1	FTSH protease 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90930634	90953636	-
GWHAAZE00000003	mRNA	90930634	90953636	-
GWHAAZE00000003	exon	90953014	90953636	-
GWHAAZE00000003	exon	90947557	90947710	-
GWHAAZE00000003	exon	90944174	90944266	-
GWHAAZE00000003	exon	90943466	90943554	-
GWHAAZE00000003	exon	90941875	90941995	-
GWHAAZE00000003	exon	90940755	90940874	-
GWHAAZE00000003	exon	90940619	90940669	-
GWHAAZE00000003	exon	90939541	90939602	-
GWHAAZE00000003	exon	90938921	90938978	-
GWHAAZE00000003	exon	90937545	90937670	-
GWHAAZE00000003	exon	90937383	90937463	-
GWHAAZE00000003	exon	90934631	90934760	-
GWHAAZE00000003	exon	90933773	90933921	-
GWHAAZE00000003	exon	90933083	90933364	-
GWHAAZE00000003	exon	90932243	90932332	-
GWHAAZE00000003	exon	90931954	90932007	-
GWHAAZE00000003	exon	90930634	90930795	-
GWHAAZE00000003	CDS	90953014	90953636	-
GWHAAZE00000003	CDS	90947557	90947710	-
GWHAAZE00000003	CDS	90944174	90944266	-
GWHAAZE00000003	CDS	90943466	90943554	-
GWHAAZE00000003	CDS	90941875	90941995	-
GWHAAZE00000003	CDS	90940755	90940874	-
GWHAAZE00000003	CDS	90940619	90940669	-
GWHAAZE00000003	CDS	90939541	90939602	-
GWHAAZE00000003	CDS	90938921	90938978	-
GWHAAZE00000003	CDS	90937545	90937670	-
GWHAAZE00000003	CDS	90937383	90937463	-
GWHAAZE00000003	CDS	90934631	90934760	-
GWHAAZE00000003	CDS	90933773	90933921	-
GWHAAZE00000003	CDS	90933083	90933364	-
GWHAAZE00000003	CDS	90932243	90932332	-
GWHAAZE00000003	CDS	90931954	90932007	-
GWHAAZE00000003	CDS	90930634	90930795	-

Transcript Sequence
>GWHTAAZE012765 ATGAGTGTTCTTCAAGCTTCTCTCATTAACAATCCTATTTCACTATCAAACTCTCACCTCTCCTTTTCAAATCGCTTCAAATTCTCTCACTCCCGCTCTCATTCTGTCCATTATTCTTCCTTTTCTCTATCTACATTCGATTTTAATTCGCACAAACCTCGATTTCTCCGTCTAGGTGTTGTATTTCGTTGTACATTACAGCCTGATAATGTATATTCCAGCTCTGAATTTAACTTTAGCAATAAAAACTCCGATTTGGAGTTCGATGAATTGACAAGTAACGAGGTTTCAAAAAATAAGAAGGAATCGGAGAATTTGGTTGAAAATTCCAGCTCTGATTTGAATTTTAGAATTAGCGAGATTTCGAGAGAGAGTTTGAAAACTGAGGAGAATTTGGTGGAAAATATGGAGTCGGAGAGTAGGTTACCGATTGTGGTGTTTTTTATGGGACTCTTGGCGAGGTTGCGGAAAGGTTTTGAGAAGCTTTTGTTGTCGGGTTGGTTTAATTGGTGGCCTTTCTGGTGGCAAGAGAAGAGGTTGGAGCTTTTGCTCGCTCAAGCTGATGCAAATCCCAAGGATGCAGAAAAGCAGAGTAGATTGTTGGCTGAACTTAATAAGGAGAGTCCAGAGTCTGTCATAAGGCGTTTCGAGCAAAGGGATTATGCAGTAGACAGTAGAGGAGTTGCGGAATATATTCGAGCACTTGTGGCCACTAATGCTATTGCCGAATATCTTCCAGATGAGCAATCTGGAAAGCCTTCTAGTCTTCCTGCATTGTTAGAAGAATTGAAGCAGCGTGCATCAGGGGACATCAATGAGGCTTTTCTCAATCCTGGCATATCTGAGAAGCAGCCATTGCATGTAGTGATGGTTGACCCGAAGGCGTCAAACAAATCATCATGGTTAGAGCCAGAGTTCATCTCAACCATTCTTTTCAGTTTTGCTGTTGGTGTTCTGTGGGTAATGGGTGCTGCTGCAGTTCAGAAGCATATTAGTAGCTTAGGCGGAGTGGGAGCTTCAGGTGTTGGGTCAAGTTCTTATTCCCCAAAAGACTTGAATAAAGAAATAATGCCTGAGAAGAATGTCAAAACATTCAAGGACGTCAAAGGTTGTGATGATGCTAAAGAAGAGCTTGAGGAGGTGGTGGAGTACCTCAGAAACCCAACAAAATTTACTCGACTTGGGGGGAAGTTGCCAAAGGGTATTCTTCTGACTGGAGCTCCTGGAACTGGAAAAACTCTGCTTGCCAAGGCTATTGCGGGAGAAGCAGGGGTACCCTTTTTTTATAGAGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGCGTTGGTGCTCGGAGGGTAAGATCCTTATTCCAAGCAGCAAAGAAGAAGGCTCCTTGCATCATTTTCATCGATGAAATTGATGCCGTTGGATCAACTAGGAAGCAATGGGAAGGTCATACAAAGAAAACATTGCATCAACTGCTCGTTGAAATGGATGGGTTTGAACAAAATGAGGGTATAATTTTGATGGCCGCAACAAATTTGCCTGATATTCTTGATCCAGCTTTAACAAGGCCTGGTAGATTTGACAGGCATATTGTTGTTCCTAATCCGGATGTGCGGGGTCGCCAAGAGATATTGGAGCTCTATTTACAAGACAAACCAATGGCGGATGATGTTGATGTGAAAGCAATTGCTCGTGGTACGCCAGGGTTCAACGGGGCGGATTTGGCAAACTTGGTGAATATTGCTGCAATTAGGGCTGCTGTCTCAGGAGCTGATAAATTAAATTCGACACAGCTGGAGTTTGCAAAGGATAGGATAATTATGGGTACGGAGCGGAAAACAATGTTTATATCAGAAGATTCAAAAAAGCTTACTGCATATCATGAGAGTGGCCATGCAATTGTTGCCCTAAATACCAACGGCGCACATCCAATCCACAAGGCTACAATAATGCCACGTGGATCTGCATTGGGAATGGTGACACAGCTCCCTTCGAGTGATGATACATCAATTAGCAAAAAGCAGTTGTTAGCGCGTCTTGATGTTTGTATGGGAGGAAGAGTTGCAGAAGAACTCATCTTTGGTCAAGACTATATCACTACCGGCGCAAGTAGTGATCTTAGCACGGCCACAGAGCTTGCTCAATATATGGTATCGTCTTGTGGGATGAGCGATTCAATTGGGCCTGTTCACATAAAAGAGCGGCCTGGTTCAGAAATGCAATCACGTATCGATGCTGAAGTGGTTAAACTCTTAAGAGAAGCTTATGATCGAGTGAAGACGCTTTTGAAGAAGCATGAGAAGGCATTACACGCACTGGCGAATGCACTTCTCAAGTACGAGACGCTTAGTGCAGAGGAAATAAAACGTGTTCTGCTTCCCAATCACAAAGTGCCATCTCCCGAGCAAGAACAGCAGCAGCAACAACAGGAGGAAGAGGAGCTTGTATTGGCTTAA

Network for GWHGAAZE012751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	402	530	3.00E-40
PF17862.2	AAA_lid_3	553	583	3.10E-08
PF01434.19	Peptidase_M41	612	787	9.40E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08955	YME1	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0005524	molecular_function	ATP binding
GO:0004222	molecular_function	metalloendopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.315
	SRR3591706	second leaf	25.186
	SRR3591707	mature leaf	23.023
	SRR3591708	Shoot apex	29.929
	SRR3591709	Stem	12.660
	SRR3591710	White floral bud	9.495
	SRR3591711	White flower	12.154
	SRR3591712	Green floral bud	10.485
	SRR3591713	Yellow flower	8.964
SRP173429	SRR8316895	Juvenile bud stage	7.422
	SRR8316896	Juvenile bud stage	7.803
	SRR8316897	Juvenile bud stage	5.099
	SRR8316894	Third green stage	3.050
	SRR8316900	Third green stage	8.652
	SRR8316901	Third green stage	7.657
	SRR8316898	Complete white stage	2.215
	SRR8316899	Complete white stage	7.101
	SRR8316903	Complete white stage	4.081
	SRR8316902	Silver flowering stage	1.156
	SRR8316904	Silver flowering stage	2.083
	SRR8316905	Silver flowering stage	0.838
	SRR8316906	Gold flowering stage	3.158
	SRR8316907	Gold flowering stage	3.440
	SRR8316908	Gold flowering stage	3.808
SRP132670	SRR6706286	Control	9.241
	SRR6706287	Light intensity 50%	8.685
	SRR6706288	Light intensity 20%	9.506
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.840
	CNS0095593	Slightly white alabastrum(diploid) 2	5.551
	CNS0095594	Slightly white alabastrum(diploid) 3	4.184
	CNS0095595	Whole white alabastrum(diploid) 2	4.401
	CNS0095596	Whole white alabastrum(diploid) 3	4.557
	CNS0095597	Whole white alabastrum(diploid) 4	4.110
	CNS0095598	Silvery flower (diploied) 1	13.725
	CNS0095599	Silvery flower (diploied) 2	12.147
	CNS0095600	Silvery flower (diploied) 3	6.576
	CNS0095601	Golden flower (diploid) 1	10.579
	CNS0095602	Golden flower (diploid) 2	8.690
	CNS0095603	Golden flower (diploid) 3	9.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.931
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.698
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.633
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.205
	CNS0095610	Silvery flower (tetraploid) 1	5.138
	CNS0095611	Silvery flower (tetraploid) 2	7.180
	CNS0095612	Silvery flower (tetraploid) 3	4.487
	CNS0095613	Golden flower (tetraploid) 1	2.495
	CNS0095614	Golden flower (tetraploid) 2	4.451
	CNS0095615	Golden flower (tetraploid) 3	2.088
CRA001975	CRR073297	Stem 1	16.605
	CRR073298	Stem 2	15.167
	CRR073299	Stem 3	14.673
	CRR073300	Leaf 1	9.797
	CRR073301	Leaf 2	10.524
	CRR073302	Leaf 3	7.317
	CRR073303	Juvenile bud 1	7.301
	CRR073304	Juvenile bud 2	6.260
	CRR073305	Juvenile bud 3	8.783
	CRR073306	Third green 1	1.540
	CRR073307	Third green 2	0.855
	CRR073308	Third green 3	1.326
	CRR073309	Second white 1	2.130
	CRR073310	Second white 2	1.416
	CRR073311	Second white 3	1.985
	CRR073312	Silver flowering 1	1.476
	CRR073313	Silver flowering 2	1.024
	CRR073314	Silver flowering 3	1.828
	CRR073315	Gold flowering 1	20.631
	CRR073316	Gold flowering 2	31.444
	CRR073317	Gold flowering 3	18.874
	CRR073318	Tawny withering 1	11.141
	CRR073319	Tawny withering 2	9.402
	CRR073320	Tawny withering 3	8.815