Gene detail

Detail information of GWHGAAZE012760

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05092.1	7.4179E-148	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SUP6\|WRK53_ARATH	2E-58	Probable WRKY transcription factor 53
trEMBL	tr\|A0A068U9W8\|A0A068U9W8_COFCA	3E-148	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05092.1}
TAIR10	AT4G23810.1	1E-46	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91074541	91077444	+
GWHAAZE00000003	mRNA	91074541	91077444	+
GWHAAZE00000003	exon	91074541	91074946	+
GWHAAZE00000003	exon	91075550	91075678	+
GWHAAZE00000003	exon	91076853	91077444	+
GWHAAZE00000003	five_prime_UTR	91074541	91074617	+
GWHAAZE00000003	CDS	91074618	91074946	+
GWHAAZE00000003	CDS	91075550	91075678	+
GWHAAZE00000003	CDS	91076853	91077444	+

Transcript Sequence
>GWHTAAZE012774 ATCAGGGTCTAGATCCTTGGCTTATATAGTCAACTAATACAACACAATTCTCATTTGCGTAATTTTGAGAGTTTTTAATGGAGAATTCAAGTGATTGGGAACATAGGAATCTGATCAATGAGTTGAAACAAGGAAGAGATTTAGCTAAACAGCTCCAAATCCATCTAAACAAGCCCAATTCTTCAAATGCGATGCGTGAATTTTTGGTTCATGAGATCCTCAACTCTTACGACAAGGCATTTTCGATGCTTAATTATAATACTGGAATAACTGTTGAGACGCAATCAGTAGGTACAGCACCTATTGGGATGTTAGAATCGCCGCAATCTTTGAGCTGGAGCCCGCACAGTGAAGATTCTGACCGCGATTTTAAGGATCATGACAACCAAGATGTCTCGAAAAAGAGAAAGTCAATGCCAAGATGGACACAACGAGTGCAAATTTGCCAAGGGACAGGACTTGAAGGGCCTCTGGATGATGGTTTTAATTGGAGGAAATATGGGCAAAAGGACATTCTTGGTGCCAAATATCCTAGAGGCTACTATAGGTGCACTCATAGAAATGCACAAGGATGTTTGGCTACAAAACAAGTCCAAAGATCAGATGAAGATTCAACCATATTTGAAATCACTTATAGGGGAACTCACACTTGTACCCAAGCCTCCCTTTTAACTCCACCCTCCTCACCCCCACCACCACAACAAGAACCAAATCCCCAATCACAAGAAACACTTCTCAACTTCCAAACAGGCCTTAAGGTCATAACCGACGACTTGGACACGCAAGAAAACAATTTCCCTCCATTTCATTTCCCTTCGGGCTCGAATACTATGCCCCAAGAGAGTGTGGTTATGCCTTGTTTGGTTGACAACAATTTTTCCGGGAATTTTTCTCCTTTATATGTGTCCCCAGCTACATCTAGCTCGAACTATTTCTCCTTGTCGCCTACACGTGTGAGTGGCTATGTTGGGACCCACAATGTGCACGGTTCTGATAGTGAACTCAATGAGATAATATCAGCTTCGACTTCGGCTACTAATTCGCCTATTGTTGGTGCAGACATCCCATTTGGTCACGTGGAGTTTGGGTCGAATTTTACATTCGATAATTCAGGTTTCTTTTCTTAA

Network for GWHGAAZE012760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	133	192	1.00E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.459
	SRR3591706	second leaf	0.246
	SRR3591707	mature leaf	0.775
	SRR3591708	Shoot apex	0.992
	SRR3591709	Stem	6.354
	SRR3591710	White floral bud	1.178
	SRR3591711	White flower	8.050
	SRR3591712	Green floral bud	0.846
	SRR3591713	Yellow flower	6.427
SRP173429	SRR8316895	Juvenile bud stage	1.716
	SRR8316896	Juvenile bud stage	0.911
	SRR8316897	Juvenile bud stage	0.422
	SRR8316894	Third green stage	0.364
	SRR8316900	Third green stage	0.626
	SRR8316901	Third green stage	0.345
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	1.501
	SRR8316903	Complete white stage	0.091
	SRR8316902	Silver flowering stage	0.367
	SRR8316904	Silver flowering stage	1.129
	SRR8316905	Silver flowering stage	0.607
	SRR8316906	Gold flowering stage	2.970
	SRR8316907	Gold flowering stage	1.812
	SRR8316908	Gold flowering stage	5.264
SRP132670	SRR6706286	Control	1.362
	SRR6706287	Light intensity 50%	2.264
	SRR6706288	Light intensity 20%	1.282
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.135
	CNS0095593	Slightly white alabastrum(diploid) 2	4.305
	CNS0095594	Slightly white alabastrum(diploid) 3	2.512
	CNS0095595	Whole white alabastrum(diploid) 2	2.617
	CNS0095596	Whole white alabastrum(diploid) 3	0.111
	CNS0095597	Whole white alabastrum(diploid) 4	1.284
	CNS0095598	Silvery flower (diploied) 1	7.612
	CNS0095599	Silvery flower (diploied) 2	4.236
	CNS0095600	Silvery flower (diploied) 3	2.164
	CNS0095601	Golden flower (diploid) 1	12.941
	CNS0095602	Golden flower (diploid) 2	9.916
	CNS0095603	Golden flower (diploid) 3	8.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.043
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.277
	CNS0095611	Silvery flower (tetraploid) 2	0.069
	CNS0095612	Silvery flower (tetraploid) 3	0.368
	CNS0095613	Golden flower (tetraploid) 1	0.590
	CNS0095614	Golden flower (tetraploid) 2	0.445
	CNS0095615	Golden flower (tetraploid) 3	0.194
CRA001975	CRR073297	Stem 1	0.999
	CRR073298	Stem 2	0.165
	CRR073299	Stem 3	0.263
	CRR073300	Leaf 1	0.111
	CRR073301	Leaf 2	0.306
	CRR073302	Leaf 3	0.042
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.141
	CRR073305	Juvenile bud 3	0.122
	CRR073306	Third green 1	0.472
	CRR073307	Third green 2	0.105
	CRR073308	Third green 3	0.100
	CRR073309	Second white 1	0.066
	CRR073310	Second white 2	1.382
	CRR073311	Second white 3	0.567
	CRR073312	Silver flowering 1	10.767
	CRR073313	Silver flowering 2	7.595
	CRR073314	Silver flowering 3	5.778
	CRR073315	Gold flowering 1	2.454
	CRR073316	Gold flowering 2	4.116
	CRR073317	Gold flowering 3	6.238
	CRR073318	Tawny withering 1	2.409
	CRR073319	Tawny withering 2	19.167
	CRR073320	Tawny withering 3	0.576