Gene detail

Detail information of GWHGAAZE012762

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267695.2	0	PREDICTED: probable dihydrofolate synthetase isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8W035\|FPGS3_ARATH	2E-30	Folylpolyglutamate synthase {ECO:0000250\|UniProtKB:Q05932, ECO:0000312\|EMBL:CAC82079.1}
trEMBL	tr\|E0CUK0\|E0CUK0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22549.3}
TAIR10	AT5G41480.1	5E-149	Folylpolyglutamate synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91118205	91125768	-
GWHAAZE00000003	mRNA	91118205	91125768	-
GWHAAZE00000003	exon	91118205	91118557	-
GWHAAZE00000003	exon	91119880	91120011	-
GWHAAZE00000003	exon	91120880	91121011	-
GWHAAZE00000003	exon	91121610	91121709	-
GWHAAZE00000003	exon	91121858	91122046	-
GWHAAZE00000003	exon	91123176	91123337	-
GWHAAZE00000003	exon	91123475	91123537	-
GWHAAZE00000003	exon	91124147	91124297	-
GWHAAZE00000003	exon	91124725	91124822	-
GWHAAZE00000003	exon	91125484	91125768	-
GWHAAZE00000003	CDS	91125484	91125768	-
GWHAAZE00000003	CDS	91124725	91124822	-
GWHAAZE00000003	CDS	91124147	91124297	-
GWHAAZE00000003	CDS	91123475	91123537	-
GWHAAZE00000003	CDS	91123176	91123337	-
GWHAAZE00000003	CDS	91121858	91122046	-
GWHAAZE00000003	CDS	91121610	91121709	-
GWHAAZE00000003	CDS	91120880	91121011	-
GWHAAZE00000003	CDS	91119880	91120011	-
GWHAAZE00000003	CDS	91118205	91118557	-

Transcript Sequence
>GWHTAAZE012776 ATGAAACTATTCAGAGTTGTCAGCGGACGCATCAGTCATACTCGCAGAGAAACCCTACTTTCTGCAGCTACTAAAGTTCTAAGCAACTTAGGTTCTGACCGAAGCTTTTCTATGCCCTCTGAAGATAGTGAACTTAAAGAGTTCTTGGATTACTTGAACAATCTGAAGAACTTTGAAAAGTCAGGGGTGCCTAAAGGTGCTGGAACGGATTCCGAGGATGGATTTGATCTTGGAAGGATGAGACGGTTGATGAATTTGCTTGGTAACCCTCAATCCAAGTTCAAGGCTGTTCACATTGCTGGGACCAAGGGTAAAGGATCAACTGCTGCATTTCTATCTAATATTTTACGTGCCGAAGGGCTTTCTGTCGGTTGCTATACTAGCCCACATATTCATAGTATCAGGGAACGCATATCATTGGGAAGATCAGGTGAGCCAGTTTCAGCAAAGGTGATGAATTGCCATTTCCAAAGGAACAAAATGATTCTTGACCAGGCAGTGGAACTTGAAAATGGATGTCTTAGTCATTTTGAGGTTTTTACTGCTATGGCATTCAGCTTATTTGCAGAAGAGAATGTTGATATTGCCATTGTTGAGGCTGGGTTAGGTGGAGCAAGGGATGCAACAAATATTATTTCTAGTACTGGACTTGCTGCTTCAATCATAACATCGATTAGTGAAGAACATCTGGCGGCACTTGGGGGTTCTCTTGAAAGTATCGCAATGGCAAAATCGGGAATAATAAAAAGCGGCCGCCCATTGGTGCTAGGTGGGTCATATCTTCCACATATTGAGCGGATTATTCGTGACAAAGCATCCTCAATGTGCTCCCCTGTAATATCAGCATCTGATCCTGGAAATAAAAGTACAGTAAAAGGCATTAGCAATGTCTCTGGCAAACTTTGTCAATCTTGTGATATAGTGATTGAAATTAAGGACTTGCGATCGTCCATTGAGTTGCTTGATGTAAATTTATGCATGCTTGGTGTTCACCAACTTCAAAATGCTGCCACTGCCACTTGTGCAGCTCTTTGCCTTCGCGATCAAGGGTGGAGAATATCAGATGAATCTGTTTGTGCTGGTCTAGAACTTACATATTTGCCAGGGAGAAGCCAAATTTTGACATCTAAGGAAGCTGATGCACTAGGACTACCTGGAGCAACTATACTCCTTGATGGAGCGCATACCAAGGAGTCTGCCAAGGCTTTGGCTGACACAATTCAAATGGCATTTCCAAAGGCAAGTTTGCTTCTTGTGGTTGCTATGGCCAGTGACAAAGACCATATGGGTTTTGCTCAAGAACTAATTTCAGTGGAACGATTGGAGGGTGTATTCTTGACAGAAGTTAGCATTGCCGGATCCAATTCTCGAACAACTTCGTCTTCCCAGTTAAAAGATTGTTGGATCCAAGCTTCCAAAGAGACAGGCTCCAGTATTCTTGAATATCATGCTGAAGAATACATCAATTTCCTCAAGAACCACTCAGTTCACTGTACACAGGAGATCAACCGTAAACCCCTATTATTTTCCGAGGGTTCACTAATGGCTTCGATGAGGGCTGCACATCATATTCTCAAAACAAGAACTAGGGATCAACCAGGTATCATTGTTGTTACTGGATCTTTACATCTTGTTTCGTCGGTGTTAGATTATTTCCAAAACTAA

Network for GWHGAAZE012762

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08245.13	Mur_ligase_M	99	343	1.80E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20457	DHFS	Metabolic pathways	map01100
K20457	DHFS	Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0009396	biological_process	folic acid-containing compound biosynthetic process
GO:0005524	molecular_function	ATP binding
GO:0016874	molecular_function	ligase activity
GO:0004326	molecular_function	tetrahydrofolylpolyglutamate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.695
	SRR3591706	second leaf	5.127
	SRR3591707	mature leaf	5.709
	SRR3591708	Shoot apex	8.212
	SRR3591709	Stem	8.113
	SRR3591710	White floral bud	5.920
	SRR3591711	White flower	8.297
	SRR3591712	Green floral bud	6.097
	SRR3591713	Yellow flower	5.113
SRP173429	SRR8316895	Juvenile bud stage	4.420
	SRR8316896	Juvenile bud stage	6.377
	SRR8316897	Juvenile bud stage	3.981
	SRR8316894	Third green stage	2.651
	SRR8316900	Third green stage	7.846
	SRR8316901	Third green stage	7.691
	SRR8316898	Complete white stage	1.601
	SRR8316899	Complete white stage	9.824
	SRR8316903	Complete white stage	2.888
	SRR8316902	Silver flowering stage	1.948
	SRR8316904	Silver flowering stage	2.787
	SRR8316905	Silver flowering stage	1.669
	SRR8316906	Gold flowering stage	4.155
	SRR8316907	Gold flowering stage	3.720
	SRR8316908	Gold flowering stage	4.027
SRP132670	SRR6706286	Control	4.418
	SRR6706287	Light intensity 50%	4.211
	SRR6706288	Light intensity 20%	4.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.857
	CNS0095593	Slightly white alabastrum(diploid) 2	5.194
	CNS0095594	Slightly white alabastrum(diploid) 3	3.622
	CNS0095595	Whole white alabastrum(diploid) 2	4.082
	CNS0095596	Whole white alabastrum(diploid) 3	5.742
	CNS0095597	Whole white alabastrum(diploid) 4	5.570
	CNS0095598	Silvery flower (diploied) 1	8.109
	CNS0095599	Silvery flower (diploied) 2	5.577
	CNS0095600	Silvery flower (diploied) 3	7.821
	CNS0095601	Golden flower (diploid) 1	7.980
	CNS0095602	Golden flower (diploid) 2	9.439
	CNS0095603	Golden flower (diploid) 3	9.107
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.839
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.119
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.499
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.357
	CNS0095610	Silvery flower (tetraploid) 1	9.982
	CNS0095611	Silvery flower (tetraploid) 2	14.000
	CNS0095612	Silvery flower (tetraploid) 3	4.735
	CNS0095613	Golden flower (tetraploid) 1	6.107
	CNS0095614	Golden flower (tetraploid) 2	10.461
	CNS0095615	Golden flower (tetraploid) 3	3.968
CRA001975	CRR073297	Stem 1	6.769
	CRR073298	Stem 2	5.910
	CRR073299	Stem 3	5.947
	CRR073300	Leaf 1	5.865
	CRR073301	Leaf 2	6.076
	CRR073302	Leaf 3	5.176
	CRR073303	Juvenile bud 1	3.894
	CRR073304	Juvenile bud 2	3.780
	CRR073305	Juvenile bud 3	5.057
	CRR073306	Third green 1	0.292
	CRR073307	Third green 2	0.244
	CRR073308	Third green 3	0.158
	CRR073309	Second white 1	1.226
	CRR073310	Second white 2	0.918
	CRR073311	Second white 3	0.358
	CRR073312	Silver flowering 1	0.610
	CRR073313	Silver flowering 2	0.633
	CRR073314	Silver flowering 3	0.097
	CRR073315	Gold flowering 1	6.175
	CRR073316	Gold flowering 2	8.236
	CRR073317	Gold flowering 3	5.207
	CRR073318	Tawny withering 1	4.062
	CRR073319	Tawny withering 2	4.889
	CRR073320	Tawny withering 3	6.603