Detail information of GWHGAAZE012775


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002520393.11.33765E-43ubiquitin-protein ligase, putative [Ricinus communis]
Swissprottr|Q9SU30|CPR30_ARATH4E-37F-box protein CPR30
trEMBLtr|B9S324|B9S324_RICCO5E-44Ubiquitin-protein ligase, putative {ECO:0000313|EMBL:EEF42009.1}
TAIR10AT3G06240.17E-28F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9132630691327433-
GWHAAZE00000003mRNA9132630691327433-
GWHAAZE00000003exon9132630691327433-
GWHAAZE00000003CDS9132630691327433-
Transcript Sequence

Network for GWHGAAZE012775

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box6471.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.023
SRR3591706second leaf28.096
SRR3591707mature leaf44.317
SRR3591708Shoot apex30.462
SRR3591709Stem29.916
SRR3591710White floral bud12.264
SRR3591711White flower13.189
SRR3591712Green floral bud16.893
SRR3591713Yellow flower14.424
SRP173429 SRR8316895Juvenile bud stage 27.543
SRR8316896Juvenile bud stage 44.501
SRR8316897Juvenile bud stage 14.686
SRR8316894Third green stage 18.063
SRR8316900Third green stage 46.943
SRR8316901Third green stage 50.825
SRR8316898Complete white stage 10.777
SRR8316899Complete white stage 50.668
SRR8316903Complete white stage 24.820
SRR8316902Silver flowering stage8.958
SRR8316904Silver flowering stage12.102
SRR8316905Silver flowering stage4.558
SRR8316906Gold flowering stage 13.649
SRR8316907Gold flowering stage 14.673
SRR8316908Gold flowering stage 16.635
SRP132670SRR6706286Control17.853
SRR6706287Light intensity 50%22.244
SRR6706288Light intensity 20%22.880
CNP0000432CNS0095592Slightly white alabastrum(diploid) 155.031
CNS0095593Slightly white alabastrum(diploid) 248.917
CNS0095594Slightly white alabastrum(diploid) 340.357
CNS0095595Whole white alabastrum(diploid) 242.808
CNS0095596Whole white alabastrum(diploid) 341.320
CNS0095597Whole white alabastrum(diploid) 450.068
CNS0095598Silvery flower (diploied) 132.039
CNS0095599Silvery flower (diploied) 231.845
CNS0095600Silvery flower (diploied) 327.986
CNS0095601Golden flower (diploid) 124.949
CNS0095602Golden flower (diploid) 224.053
CNS0095603Golden flower (diploid) 323.917
CNS0095604Slightly white alabastrum(tetraploid) 153.549
CNS0095605Slightly white alabastrum(tetraploid) 250.029
CNS0095606Slightly white alabastrum(tetraploid) 359.222
CNS0095607Whole white alabastrum(tetraploid) 141.262
CNS0095608Whole white alabastrum(tetraploid) 234.831
CNS0095609Whole white alabastrum(tetraploid) 349.027
CNS0095610Silvery flower (tetraploid) 132.737
CNS0095611Silvery flower (tetraploid) 227.322
CNS0095612Silvery flower (tetraploid) 311.642
CNS0095613Golden flower (tetraploid) 128.627
CNS0095614Golden flower (tetraploid) 226.845
CNS0095615Golden flower (tetraploid) 331.290
CRA001975CRR073297Stem 18.014
CRR073298Stem 28.608
CRR073299Stem 33.576
CRR073300Leaf 113.716
CRR073301Leaf 211.460
CRR073302Leaf 33.673
CRR073303Juvenile bud 14.155
CRR073304Juvenile bud 23.532
CRR073305Juvenile bud 33.784
CRR073306Third green 12.786
CRR073307Third green 21.400
CRR073308Third green 32.707
CRR073309Second white 13.097
CRR073310Second white 25.336
CRR073311Second white 36.071
CRR073312Silver flowering 15.747
CRR073313Silver flowering 24.141
CRR073314Silver flowering 31.991
CRR073315Gold flowering 13.474
CRR073316Gold flowering 27.136
CRR073317Gold flowering 31.763
CRR073318Tawny withering 14.165
CRR073319Tawny withering 24.327
CRR073320Tawny withering 33.574