Detail information of GWHGAAZE012804


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263259.11.32195E-75PREDICTED: GRF1-interacting factor 1-like [Vitis vinifera]
Swissprottr|Q8L8A5|GIF1_ARATH1E-41GRF1-interacting factor 1
trEMBLtr|F6HVK9|F6HVK9_VITVI5E-76Putative uncharacterized protein {ECO:0000313|EMBL:CCB58722.1}
TAIR10AT5G28640.12E-23SSXT family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9175314191755441-
GWHAAZE00000003mRNA9175314191755441-
GWHAAZE00000003exon9175314191753506-
GWHAAZE00000003exon9175459991754689-
GWHAAZE00000003exon9175492791755003-
GWHAAZE00000003exon9175537391755441-
GWHAAZE00000003CDS9175537391755441-
GWHAAZE00000003CDS9175492791755003-
GWHAAZE00000003CDS9175459991754689-
GWHAAZE00000003CDS9175314191753506-
Transcript Sequence

Network for GWHGAAZE012804

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0266


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05030.13SSXT25735.30E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003713molecular_functiontranscription coactivator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.624
SRR3591706second leaf2.597
SRR3591707mature leaf0.000
SRR3591708Shoot apex108.405
SRR3591709Stem0.480
SRR3591710White floral bud50.967
SRR3591711White flower49.473
SRR3591712Green floral bud7.429
SRR3591713Yellow flower2.454
SRP173429 SRR8316895Juvenile bud stage 26.755
SRR8316896Juvenile bud stage 24.259
SRR8316897Juvenile bud stage 12.362
SRR8316894Third green stage 5.081
SRR8316900Third green stage 1.668
SRR8316901Third green stage 2.955
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 6.629
SRR8316903Complete white stage 5.094
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.057
SRR8316907Gold flowering stage 0.169
SRR8316908Gold flowering stage 0.093
SRP132670SRR6706286Control5.528
SRR6706287Light intensity 50%6.345
SRR6706288Light intensity 20%5.093
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.161
CNS0095593Slightly white alabastrum(diploid) 234.022
CNS0095594Slightly white alabastrum(diploid) 329.019
CNS0095595Whole white alabastrum(diploid) 217.374
CNS0095596Whole white alabastrum(diploid) 34.971
CNS0095597Whole white alabastrum(diploid) 412.208
CNS0095598Silvery flower (diploied) 1107.048
CNS0095599Silvery flower (diploied) 293.141
CNS0095600Silvery flower (diploied) 317.677
CNS0095601Golden flower (diploid) 1117.390
CNS0095602Golden flower (diploid) 231.094
CNS0095603Golden flower (diploid) 336.672
CNS0095604Slightly white alabastrum(tetraploid) 142.184
CNS0095605Slightly white alabastrum(tetraploid) 243.564
CNS0095606Slightly white alabastrum(tetraploid) 364.800
CNS0095607Whole white alabastrum(tetraploid) 121.311
CNS0095608Whole white alabastrum(tetraploid) 22.001
CNS0095609Whole white alabastrum(tetraploid) 34.599
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 224.200
CNS0095612Silvery flower (tetraploid) 36.454
CNS0095613Golden flower (tetraploid) 10.085
CNS0095614Golden flower (tetraploid) 20.460
CNS0095615Golden flower (tetraploid) 33.602
CRA001975CRR073297Stem 158.096
CRR073298Stem 239.968
CRR073299Stem 381.263
CRR073300Leaf 12.542
CRR073301Leaf 25.131
CRR073302Leaf 34.098
CRR073303Juvenile bud 11.076
CRR073304Juvenile bud 20.494
CRR073305Juvenile bud 30.754
CRR073306Third green 10.169
CRR073307Third green 20.000
CRR073308Third green 30.557
CRR073309Second white 10.068
CRR073310Second white 20.038
CRR073311Second white 30.000
CRR073312Silver flowering 10.077
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.076
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.318
CRR073317Gold flowering 30.130
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.094
CRR073320Tawny withering 30.000