Detail information of GWHGAAZE012809


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007035345.14.85998E-41F-box family protein [Theobroma cacao]
Swissprottr|Q9SU30|CPR30_ARATH4E-32F-box protein CPR30
trEMBLtr|A0A061EN61|A0A061EN61_THECC2E-41F-box family protein {ECO:0000313|EMBL:EOY06271.1}
TAIR10AT4G12560.22E-29F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9187666591877822+
GWHAAZE00000003mRNA9187666591877822+
GWHAAZE00000003exon9187666591877822+
GWHAAZE00000003CDS9187666591877822+
Transcript Sequence

Network for GWHGAAZE012809

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like6441.10E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.760
SRR3591706second leaf3.311
SRR3591707mature leaf4.270
SRR3591708Shoot apex5.251
SRR3591709Stem5.176
SRR3591710White floral bud2.316
SRR3591711White flower2.978
SRR3591712Green floral bud3.365
SRR3591713Yellow flower1.968
SRP173429 SRR8316895Juvenile bud stage 2.921
SRR8316896Juvenile bud stage 2.434
SRR8316897Juvenile bud stage 1.765
SRR8316894Third green stage 1.469
SRR8316900Third green stage 4.462
SRR8316901Third green stage 2.918
SRR8316898Complete white stage 0.815
SRR8316899Complete white stage 6.263
SRR8316903Complete white stage 1.471
SRR8316902Silver flowering stage1.037
SRR8316904Silver flowering stage1.323
SRR8316905Silver flowering stage0.538
SRR8316906Gold flowering stage 1.080
SRR8316907Gold flowering stage 1.561
SRR8316908Gold flowering stage 0.890
SRP132670SRR6706286Control2.907
SRR6706287Light intensity 50%3.295
SRR6706288Light intensity 20%2.775
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.609
CNS0095593Slightly white alabastrum(diploid) 24.086
CNS0095594Slightly white alabastrum(diploid) 32.397
CNS0095595Whole white alabastrum(diploid) 22.623
CNS0095596Whole white alabastrum(diploid) 33.572
CNS0095597Whole white alabastrum(diploid) 44.864
CNS0095598Silvery flower (diploied) 12.747
CNS0095599Silvery flower (diploied) 22.061
CNS0095600Silvery flower (diploied) 31.366
CNS0095601Golden flower (diploid) 12.770
CNS0095602Golden flower (diploid) 21.520
CNS0095603Golden flower (diploid) 31.640
CNS0095604Slightly white alabastrum(tetraploid) 13.054
CNS0095605Slightly white alabastrum(tetraploid) 23.442
CNS0095606Slightly white alabastrum(tetraploid) 34.409
CNS0095607Whole white alabastrum(tetraploid) 12.906
CNS0095608Whole white alabastrum(tetraploid) 22.995
CNS0095609Whole white alabastrum(tetraploid) 33.759
CNS0095610Silvery flower (tetraploid) 12.077
CNS0095611Silvery flower (tetraploid) 22.724
CNS0095612Silvery flower (tetraploid) 31.545
CNS0095613Golden flower (tetraploid) 10.374
CNS0095614Golden flower (tetraploid) 20.660
CNS0095615Golden flower (tetraploid) 30.322
CRA001975CRR073297Stem 13.279
CRR073298Stem 23.289
CRR073299Stem 31.623
CRR073300Leaf 13.829
CRR073301Leaf 23.145
CRR073302Leaf 32.715
CRR073303Juvenile bud 13.737
CRR073304Juvenile bud 22.491
CRR073305Juvenile bud 32.413
CRR073306Third green 10.324
CRR073307Third green 20.809
CRR073308Third green 30.106
CRR073309Second white 10.307
CRR073310Second white 20.046
CRR073311Second white 30.092
CRR073312Silver flowering 10.082
CRR073313Silver flowering 20.509
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.088
CRR073316Gold flowering 21.733
CRR073317Gold flowering 31.377
CRR073318Tawny withering 11.504
CRR073319Tawny withering 21.677
CRR073320Tawny withering 30.631