Gene detail

Detail information of GWHGAAZE012815

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653900.1	PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Vitis vinifera]
Swissprot	tr\|Q7X9V2\|PIE1_ARATH	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
trEMBL	tr\|F6HLJ9\|F6HLJ9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55255.1}
TAIR10	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91948356	91967571	+
GWHAAZE00000003	mRNA	91948356	91967571	+
GWHAAZE00000003	exon	91948356	91948477	+
GWHAAZE00000003	exon	91948602	91948645	+
GWHAAZE00000003	exon	91948753	91948814	+
GWHAAZE00000003	exon	91950517	91950652	+
GWHAAZE00000003	exon	91951437	91951511	+
GWHAAZE00000003	exon	91951593	91951666	+
GWHAAZE00000003	exon	91951756	91951893	+
GWHAAZE00000003	exon	91952623	91952661	+
GWHAAZE00000003	exon	91953098	91953166	+
GWHAAZE00000003	exon	91953497	91953692	+
GWHAAZE00000003	exon	91954034	91955353	+
GWHAAZE00000003	exon	91955433	91957025	+
GWHAAZE00000003	exon	91957829	91957893	+
GWHAAZE00000003	exon	91957982	91958049	+
GWHAAZE00000003	exon	91963718	91964489	+
GWHAAZE00000003	exon	91965513	91965679	+
GWHAAZE00000003	exon	91965760	91966038	+
GWHAAZE00000003	exon	91967133	91967571	+
GWHAAZE00000003	CDS	91948356	91948477	+
GWHAAZE00000003	CDS	91948602	91948645	+
GWHAAZE00000003	CDS	91948753	91948814	+
GWHAAZE00000003	CDS	91950517	91950652	+
GWHAAZE00000003	CDS	91951437	91951511	+
GWHAAZE00000003	CDS	91951593	91951666	+
GWHAAZE00000003	CDS	91951756	91951893	+
GWHAAZE00000003	CDS	91952623	91952661	+
GWHAAZE00000003	CDS	91953098	91953166	+
GWHAAZE00000003	CDS	91953497	91953692	+
GWHAAZE00000003	CDS	91954034	91955353	+
GWHAAZE00000003	CDS	91955433	91957025	+
GWHAAZE00000003	CDS	91957829	91957893	+
GWHAAZE00000003	CDS	91957982	91958049	+
GWHAAZE00000003	CDS	91963718	91964489	+
GWHAAZE00000003	CDS	91965513	91965679	+
GWHAAZE00000003	CDS	91965760	91966038	+
GWHAAZE00000003	CDS	91967133	91967571	+

Transcript Sequence
>GWHTAAZE012829 ATGAGTGCTTTCCTAACGGTAGTTCAATTACAGGTGATGTACAAGCATCAGTTAGAGCTTGATGAGAAAAAGAAAAAGGCACTTGATAAACAGCTTGAGTTTCTTCTAGGGCAAACAGAAAGGTACTCAACAATGCTGGCAGAAAACCTTGTAGGCCCCAATGTTGAATCTCAGTCAAATATTGTAGATAATGATGAAGATTTTGATTTACAGTCCGAAGATGAATCAGAAGATGATGAGCATACTATCGAGGAAGATGAAGCCCTCATAACTAAAGAAGAAAGGCAAGAAGAACTGGCCGCTTTGCACAATGAAATTGATCTACCTCTTGAGGAATTACTAAAGCGATATGCTGCTGAGGAATCTGGCAGAGAAAGTAGCCCTGAAAAGAATGCAGATGTAGATGAACCAACTTTGGCAGGGGAAAATGCCAGTGAGAGCAAAGAAAATGATACTTCTGCTGGTCCTAATGTTGAAAGAAGCATCTCCACTGAAGTCCCTGATCGTCGTTGTGGTGAAAGCAATGGGGGCTTTTCGATTTCGGAAAACCATCTACCAGAAGTTGTGGTACCAAGCAAAACTAGAAACCCATCAAAACATTTTCAAGAACCGAATAAGAAGCACGTGCATTATGACTTTAATGATGAAAAAGAGGATGATGATTTTGTTCTTGCTAATGGAGAAGAAAAGGATGATGAGACAACATTGTCAGAGGAAGAAGAACTAGCAAAGACAGAATCAAATAATGTCATAGACGAGGACCACCAGTACAAACTCTACTTACATAAAAAACGAGATGAACCATTTGATCCAAGAGTAAGGGGAAGGAAAGTTGAGCCCTTGACCTTTCAAGTGAAATATGGAAGTAATGGCCATAAGCACAAACTCTTCTTACTTTATGCTGATTGTATAAAAACATCGTCAAAATATTCCCTTGTGCTGTTGCACACATTGGAGGAAGATGGTCAACAGAATCTGCAGCATGGTCCCACGGATGAAGGTTATGAACCTAGTGAAATTCATCCAACAGCTGTAATTGAGGGACAGGAAGGTGGACCTGATCTAAAATCTGAAGAAAAGACAGTGAGAACAGAATTGCCGATGCAGCTGCTGCTGCTATGTCAGCACAGCCAACTGGAAACACATTTTCGACGACAAAAGTGCGCACGGTACCCTTTTCTTCTCAAGTTCTCCCTTCGCGAGTATCAACACATTGGCTTGGACTGGCTTGTGACAATGTACGAGAAGAGACTTAATGGGATTCTAGCTGATGAAATGGGCCTCGGGAAGACAATTATGACAATTGCCCTGCTTGCTCACCTTGCATGTGAAAAGGGTATATGGGGCCCACATCTCATTGTTGTTCCCACCAGTGTAATGCTCAACTGGGAAACTGAGTTTCTCAAATGGTGCCCCGCTTTTAAAATACTGACATATTTCGGAAGTGCAAAAGAGCGCAAAATTAAACGGCAAGGATGGTTGAAACCGAATTCATTTCATGTATGCATTACGACTTACCGACTTGTTATACAGGATTCTAAGGTTTTCAAGCGAAAGAAATGGAAATACTTGATTTTGGATGAGGCCCATTTAATAAAAAACTGGAAGTCTCAGCGATGGCAAACTCTTCTCAATTTTAATACGAAACGCCGTATCCTTCTAACTGGTACTCCCCTGCAGAATGATCTTATGGAGCTATGGTCTCTTATGCATTTCTTGATGCCACACATTTTTCAGTCTCATCAAGAATTTAAGGATTGGTTCAGTAATCCGATATCGGGAATGGTAGATGGTCAAGAAAAAGTCAATAAAGAAGTCATTGACCGCTTGCATAATGTCCTTCGTCCTTTTATACTCCGCCGATTGAAACGAGATGTGGAGAAACAGCTACCTATGAAAGTTGAGCACGTCATTTGCTGTAGACTCTCTAGGAGGCAGCGTAATTTGTATGAAGACTTCATTGCTAGCTCAGAGACCCAAGCTACTCTAGCGAGTTCGAATTTTTTCGGGATGATAAGTGTTATAATGCAACTTCGCAAGGTTTGCAATCATCCCGATTTATTTGAAGGCCGGCCAATTGTTAGTTCTTTTGACATGACCGGCATCGACATGCAGCTAAGTTCTTTGGTTTGTTCGGTACTTACACCTGGCCCTTTTTCTACCGTTGATCTCAGTGGTTTGGGATTTCTGTTCACCCATCTTGATTTTAGCATGGCTTCTTGGGAGAGTGATGAAGTTCAAGCTATTGCTACACCATCAAGCTTAATCGAGGGCGAGATCGAAAAGGCACTTTTGGAGGAGAGACAAAGAGAAGCCAAGGAAAGGGCAGCATCTATTGCATGGTGGAATTCGTTGAGGTGCCAAAAAAAACCTGTATATTCAACAAGCCTGCGGGACGTCGTTTCTGTGAAGCATCGTGTATATGATATTCATAGCCACGAGGGTAATCATTTGCGCTGCTTGAAGTCATCTAAGCTCGCTGACATCATACTCTCTCCAGTTGATCGCTTCAAGAAGATGATTGATCATGTTGAGGGTTTCATGTTTGCTATTCCTGCTGCACGGGCCCCACAGGCCATTTGCTGGTGCAGTAAAACTGATACATCTGTGTTTATGCACCCAACCTATAGGGAGAGATGTTCAAAACTTTTGTCACCCCTTTTATCGCCTTTTCGCCCCGCAATTGTGAGACGGCAAGTGTACTTTCCCGATAGGCGACTGATACAATTTGACTGCGGGAAGTTGCAAGAGCTTGCTACATTACTTAGGCGATTGAAATCGGAAGGTCACCGGGCACTAATATTCACCCAAATGACGAAAATGCTTGATATCTTGGAGGCTTTTATAAACTTGTACGGTTACACTTACATGCGTTTGGATGGTTCCACTCAGCCTGAGGAGAGGCAAACGTTGATGCAGCGATTTAATACAAACCCAAAAATATTTCTTTTCATTTTGTCGACTCGTAGTGGGGGTGTCGGTATCAACCTTGTTGGGGCAGATACGGTGATCTTTTATGACAGTGACTGGAACCCAGCTATGGATCAACAAGCTCAAGATCGGTGCCACCGAATAGGGCAGACGCGTGAAGTACATATTTACCGGTTGATCAGTGAGAGCACCATTGAAGAGAACATCTTAAAAAAGGCGAATCAGAAGCGAGCTCTTGACGATTTGGTTATACAAAGTGGAGGGTACAACACAGAATTTTTCAAGAAACTGGATCCGATGGAATTGTTTTCAGGTCATGGAAAAGTTCCCATAAAGAACATGCCGAAAGAGAAAAGTTGCATCAACGGAAGCGATGTTTCTTTGTCTAATGCGGATCTCGAGGCTGCATTGAAGCATGCAGAAGATGAAGCTGACTACATGGCATTGAAGAAAGTTGAACAAGAAGAGGCTGTTGACAATCAAGAGTTTACCGAAGAAGTAGTTGCAAGGATGGAGGACGATGAGTTTGTAAATGAGGACGAAATGAAGGGTGATGATTATGCTGATCAAAGTGCCTTGGTTGCTACATCATCGAAAGATAATGGGGTAATATTAAACGGGTCCGATCCGAATGAAGAGAGAGCTATCACTTGTGCTGTTAAAGACGATGATGTTGACATGTTGGCTGATGTAAAAGAGATGGCTGCTGCAGCTGCAGCGGCAGGGCAGGCAATATTGTCCTTTGAGAATCAATTACGTCCAATTGATCGATATGCAATACGTTTTTTGGAGCTGTGGGACCCGATTATTGACAAGGCAGCAGTGGAATCCCAGGTTAGGTTCGAGGAAAATGAATGGGAGCTGGATCGTATTGAGAAGTTAAAGGAGGATATGGAAGCTGAGATCGATGATGATGATGAACCTTTTGTCTATGAGAGTTGGGATACTGATTTTGCAACTCTGGCATACAAACAGCAAGTTGAAGCCTTGCACCAACATCAGTTGGAAGAATTAGAAGCTGAAGCTAGAGAGAAGGAACAAGCAGACTACGAAAATTCTGAGTCAATGAAGAACGAAAGTCTAGTTCTTTCCAAACCCAAGTCAAAGAAGAAACCTAAGAAAGCAAAGTTCAAATCCCTGAAGAAAGGAGCTCTAGCTTCTGAATTGAAGCCTGTGAAAGAAGAGCCAGAAACAGAAATGTCCATAGATTCTGAAACTTTGAGTGATACAGTGATCACCTCTTCAGATAGGGTATCACCACATTCGACTACCGAGAAAAAACGGAAAGCAGTATCAGATTTTACTGAAGAGAAGAGCAAGAAGTCGTCCAAGAAAGTCAAGAAGTCAACTGATACACCTCTTTCAGTTCTAGATTCAAATCAACTGGGTAAGCAACAGAATGAGCCAAAAGATTCAAACTTATGTGAAAGTGTTATCGATCTCGAGCATAAGCAAGTAAGCAGGAGCAAGATGGGAGGGAAAATGTCAATAACTGCTATGCCTGTAAAACGGGTTTTGACCATTAGACCGGATAAGTTAAAGAAGAAAGGGAGTATTTGGTCTAAAGATTGTTTCCCTCCACCTGATTCTTGGCTACCACAGGAGGATGTGATATTGTGTGCTGCTGTGCATGAATATGGAACACATTGGAGTTTGGTGAGTGAAATTCTATATGGAATGACTGGTGGTGGATTTCACAGGGGAATATTTCGTCATCCCATTCATTGTTGTGAGAGGTTTAGGGAACTCATTCAAAGATACATTTTTGCTGCAGTAGACAATTTGCCAAATGAAAAAGTCAGCAATGCTAGCTCTGGGAAAGCTCTCCTCAAAGTAACCGAGGATAATGTGCGGATGTTGTTGGATGTTGCCTCTGAACTACCAGATCATGAGCCACTCGTTCAAAAGCACTTCTTTGCACTGCTTTCTTTGGTCTGGAGAGCAAAAACTCTCAATGAGCGGAAAAGGAGCCCCTTGTCTTCCCATAATAATCATTATTCTTATCAAAGGCAGAGTAGCAAACTTGTGGCGGCTGCACTCTATGAGTCCCACGATACACGACTGGATGAGAGATTCTCTGTTTACAACCAGAGGGAAGAAATTTCCGCTGTTGCAGACCATATGGTAGTTACTTTGGAACTTCCGAGGGACACAGGTGATCCAACAGTACAATTTCCATCTGTCGTAAATGTTTCAATACGTATGGACCCATCAACATCCTCAAACATGCCTATAAAGGAAAGTCATAATTTTAGATCTTCGCTTCATACTGCTGAGAACCGTTTCAGGGCGGCATCAAGAACGGCTTGTGATGAAGGTTGTTCAAGTTGGGCTTCATCGGCTTTCCCAGTACATGATCTCAAATCTCGGGTCCCATTGAAATCACAGTCCGCCGGTAAACACAAGCTCCCAATCTCCGATTCAACAAAGTCTTCCAAATCAAAAATGAGAAAAATTACAACGGGACCCATTGACCCCCGTTGCCTAATTAGCGATCCAGCATTTCTAACAACACTAACGGGTCCCACTGAAGACTCCAATCTCAGGTTTGATCTGACACAATGCTCTATCGAAGAAATTGGAATTGATGATTCTCTGTTCAAAATGCAAGATGATCTAGCTTTGGAAACAGAGACTTTTGATAGGGTTCCACACGATTATATTCCTGACTTCATCTCTGGTCTGGAAGAGTGTTCATTATCGCCCGACTTTACTGATATTGGGTAG

Network for GWHGAAZE012815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	413	687	2.80E-69
PF00271.32	Helicase_C	914	1026	7.50E-20

Protein Sequence

>GWHPAAZE012822
MSAFLTVVQLQVMYKHQLELDEKKKKALDKQLEFLLGQTERYSTMLAENLVGPNVESQSNIVDNDEDFDLQSEDESEDDEHTIEEDEALITKEERQEELAALHNEIDLPLEELLKRYAAEESGRESSPEKNADVDEPTLAGENASESKENDTSAGPNVERSISTEVPDRRCGESNGGFSISENHLPEVVVPSKTRNPSKHFQEPNKKHVHYDFNDEKEDDDFVLANGEEKDDETTLSEEEELAKTESNNVIDEDHQYKLYLHKKRDEPFDPRVRGRKVEPLTFQVKYGSNGHKHKLFLLYADCIKTSSKYSLVLLHTLEEDGQQNLQHGPTDEGYEPSEIHPTAVIEGQEGGPDLKSEEKTVRTELPMQLLLLCQHSQLETHFRRQKCARYPFLLKFSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKIKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNTKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPISGMVDGQEKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPMKVEHVICCRLSRRQRNLYEDFIASSETQATLASSNFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMTGIDMQLSSLVCSVLTPGPFSTVDLSGLGFLFTHLDFSMASWESDEVQAIATPSSLIEGEIEKALLEERQREAKERAASIAWWNSLRCQKKPVYSTSLRDVVSVKHRVYDIHSHEGNHLRCLKSSKLADIILSPVDRFKKMIDHVEGFMFAIPAARAPQAICWCSKTDTSVFMHPTYRERCSKLLSPLLSPFRPAIVRRQVYFPDRRLIQFDCGKLQELATLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHGKVPIKNMPKEKSCINGSDVSLSNADLEAALKHAEDEADYMALKKVEQEEAVDNQEFTEEVVARMEDDEFVNEDEMKGDDYADQSALVATSSKDNGVILNGSDPNEERAITCAVKDDDVDMLADVKEMAAAAAAAGQAILSFENQLRPIDRYAIRFLELWDPIIDKAAVESQVRFEENEWELDRIEKLKEDMEAEIDDDDEPFVYESWDTDFATLAYKQQVEALHQHQLEELEAEAREKEQADYENSESMKNESLVLSKPKSKKKPKKAKFKSLKKGALASELKPVKEEPETEMSIDSETLSDTVITSSDRVSPHSTTEKKRKAVSDFTEEKSKKSSKKVKKSTDTPLSVLDSNQLGKQQNEPKDSNLCESVIDLEHKQVSRSKMGGKMSITAMPVKRVLTIRPDKLKKKGSIWSKDCFPPPDSWLPQEDVILCAAVHEYGTHWSLVSEILYGMTGGGFHRGIFRHPIHCCERFRELIQRYIFAAVDNLPNEKVSNASSGKALLKVTEDNVRMLLDVASELPDHEPLVQKHFFALLSLVWRAKTLNERKRSPLSSHNNHYSYQRQSSKLVAAALYESHDTRLDERFSVYNQREEISAVADHMVVTLELPRDTGDPTVQFPSVVNVSIRMDPSTSSNMPIKESHNFRSSLHTAENRFRAASRTACDEGCSSWASSAFPVHDLKSRVPLKSQSAGKHKLPISDSTKSSKSKMRKITTGPIDPRCLISDPAFLTTLTGPTEDSNLRFDLTQCSIEEIGIDDSLFKMQDDLALETETFDRVPHDYIPDFISGLEECSLSPDFTDIG

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.377
	SRR3591706	second leaf	3.757
	SRR3591707	mature leaf	4.155
	SRR3591708	Shoot apex	6.329
	SRR3591709	Stem	5.304
	SRR3591710	White floral bud	4.776
	SRR3591711	White flower	6.942
	SRR3591712	Green floral bud	4.957
	SRR3591713	Yellow flower	4.528
SRP173429	SRR8316895	Juvenile bud stage	3.258
	SRR8316896	Juvenile bud stage	3.807
	SRR8316897	Juvenile bud stage	2.223
	SRR8316894	Third green stage	1.783
	SRR8316900	Third green stage	4.034
	SRR8316901	Third green stage	3.364
	SRR8316898	Complete white stage	1.219
	SRR8316899	Complete white stage	4.046
	SRR8316903	Complete white stage	3.730
	SRR8316902	Silver flowering stage	1.774
	SRR8316904	Silver flowering stage	3.097
	SRR8316905	Silver flowering stage	1.378
	SRR8316906	Gold flowering stage	4.056
	SRR8316907	Gold flowering stage	3.757
	SRR8316908	Gold flowering stage	4.196
SRP132670	SRR6706286	Control	3.053
	SRR6706287	Light intensity 50%	3.191
	SRR6706288	Light intensity 20%	3.183
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.106
	CNS0095593	Slightly white alabastrum(diploid) 2	1.897
	CNS0095594	Slightly white alabastrum(diploid) 3	2.554
	CNS0095595	Whole white alabastrum(diploid) 2	2.002
	CNS0095596	Whole white alabastrum(diploid) 3	1.497
	CNS0095597	Whole white alabastrum(diploid) 4	2.114
	CNS0095598	Silvery flower (diploied) 1	3.959
	CNS0095599	Silvery flower (diploied) 2	2.446
	CNS0095600	Silvery flower (diploied) 3	5.084
	CNS0095601	Golden flower (diploid) 1	2.965
	CNS0095602	Golden flower (diploid) 2	6.138
	CNS0095603	Golden flower (diploid) 3	6.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.552
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.954
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.358
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.689
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.552
	CNS0095610	Silvery flower (tetraploid) 1	5.090
	CNS0095611	Silvery flower (tetraploid) 2	4.805
	CNS0095612	Silvery flower (tetraploid) 3	4.208
	CNS0095613	Golden flower (tetraploid) 1	2.019
	CNS0095614	Golden flower (tetraploid) 2	4.262
	CNS0095615	Golden flower (tetraploid) 3	5.684
CRA001975	CRR073297	Stem 1	5.294
	CRR073298	Stem 2	4.371
	CRR073299	Stem 3	2.992
	CRR073300	Leaf 1	4.668
	CRR073301	Leaf 2	3.411
	CRR073302	Leaf 3	2.032
	CRR073303	Juvenile bud 1	2.290
	CRR073304	Juvenile bud 2	2.010
	CRR073305	Juvenile bud 3	3.064
	CRR073306	Third green 1	2.380
	CRR073307	Third green 2	1.174
	CRR073308	Third green 3	2.652
	CRR073309	Second white 1	1.454
	CRR073310	Second white 2	2.483
	CRR073311	Second white 3	2.932
	CRR073312	Silver flowering 1	2.347
	CRR073313	Silver flowering 2	1.721
	CRR073314	Silver flowering 3	1.645
	CRR073315	Gold flowering 1	0.944
	CRR073316	Gold flowering 2	2.347
	CRR073317	Gold flowering 3	0.545
	CRR073318	Tawny withering 1	2.319
	CRR073319	Tawny withering 2	2.483
	CRR073320	Tawny withering 3	2.146