Gene detail

Detail information of GWHGAAZE012819

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010498.1	2.0396E-162	5'-nucleotidase / magnesium ion binding protein isoform 2 [Theobroma cacao]
trEMBL	tr\|A0A061FQX6\|A0A061FQX6_THECC	8E-163	5'-nucleotidase / magnesium ion binding protein isoform 2 {ECO:0000313\|EMBL:EOY19308.1}
TAIR10	AT2G38680.1	2E-102	5'-nucleotidases;magnesium ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92086841	92091937	+
GWHAAZE00000003	mRNA	92086841	92091937	+
GWHAAZE00000003	exon	92086841	92086954	+
GWHAAZE00000003	exon	92087874	92087934	+
GWHAAZE00000003	exon	92088027	92088159	+
GWHAAZE00000003	exon	92088885	92089008	+
GWHAAZE00000003	exon	92089328	92089384	+
GWHAAZE00000003	exon	92089507	92089603	+
GWHAAZE00000003	exon	92090437	92090644	+
GWHAAZE00000003	exon	92091859	92091937	+
GWHAAZE00000003	CDS	92086841	92086954	+
GWHAAZE00000003	CDS	92087874	92087934	+
GWHAAZE00000003	CDS	92088027	92088159	+
GWHAAZE00000003	CDS	92088885	92089008	+
GWHAAZE00000003	CDS	92089328	92089384	+
GWHAAZE00000003	CDS	92089507	92089603	+
GWHAAZE00000003	CDS	92090437	92090644	+
GWHAAZE00000003	CDS	92091859	92091937	+

Transcript Sequence
>GWHTAAZE012833 ATGGAACAAGTTGATGGTGCCACTAGATGTTTTTCAGAGGTTGTAGTGGGGGATTCCGATTCTCTTGAGAAGAAAACAGCTGCTATCCGGCTTGCAGGTCCCTCAAAACTTCAGGTAATTGCAGATTTTGATGCCACACTGACAAGATATTGGATTGATGGCCGTCGAGGCCAAAGTAGTCATGGCCTTTTGCAGCAGGCGAATCCTGAGTACAATGTCAAGAGACAGAAATTATTCGAATATTATCATCCGCTAGAGTTTAACCCAACAATTCCCCGCGACGAGAAAACAAAGCTTATGGAGGAGTGGTGGGAGAAAACCCATGGCCTTCTTATAGAGGGAGGCCTTACATATGATGCAATAAAGAACTCTGTAGCTAGTGCCATGATTGCATTTAGGGAGGGTGTAGTTGAGCTGTTTGAGTTTCTTGAGGAGAGAGATGTTCCCATTCTTATATTTTCTGCTGGACTCGCAGATATAATAGAGGAGGTCCTCCGTCAGAAACTTCATAGATCTTTTAAAAACGTGAGGATTGTATCGAACAGAATGGTATTTAATCAACATGGTTACCTAGCATCTTTTAAAGGGAAGATAATTCATAGTTTGAATAAGAATGAGCATGCTCTTGATATGGCTGCACCACTCCACGATCAATTGGGTGAAGTTGATGTTCCCATTGATGAGAATGCCTCGATAAAAAAACGAACTAATGTGCTTCTTCTTGGTGATCACATTGGAGACTTGGGAATGTCTGACGGTTTAAACTATGAGACTCGAATATCTGTCGGCTTTCTGAATGACAACATTGAGAGTTCTCTTGATAGCTACCGAAAAGCCTTTGATGTGGTGTATCTGGTGAGTGAAATGCCTTGA

Network for GWHGAAZE012819

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05822.13	UMPH-1	45	285	5.70E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01081	E3.1.3.5	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0000287	molecular_function	magnesium ion binding
GO:0008253	molecular_function	5'-nucleotidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.678
	SRR3591706	second leaf	8.606
	SRR3591707	mature leaf	2.946
	SRR3591708	Shoot apex	16.329
	SRR3591709	Stem	11.034
	SRR3591710	White floral bud	33.490
	SRR3591711	White flower	18.660
	SRR3591712	Green floral bud	32.014
	SRR3591713	Yellow flower	6.762
SRP173429	SRR8316895	Juvenile bud stage	10.478
	SRR8316896	Juvenile bud stage	12.733
	SRR8316897	Juvenile bud stage	7.850
	SRR8316894	Third green stage	7.491
	SRR8316900	Third green stage	22.991
	SRR8316901	Third green stage	19.170
	SRR8316898	Complete white stage	15.256
	SRR8316899	Complete white stage	31.421
	SRR8316903	Complete white stage	18.361
	SRR8316902	Silver flowering stage	3.978
	SRR8316904	Silver flowering stage	5.736
	SRR8316905	Silver flowering stage	2.459
	SRR8316906	Gold flowering stage	5.900
	SRR8316907	Gold flowering stage	5.446
	SRR8316908	Gold flowering stage	7.549
SRP132670	SRR6706286	Control	11.429
	SRR6706287	Light intensity 50%	12.933
	SRR6706288	Light intensity 20%	13.516
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.089
	CNS0095593	Slightly white alabastrum(diploid) 2	18.572
	CNS0095594	Slightly white alabastrum(diploid) 3	8.496
	CNS0095595	Whole white alabastrum(diploid) 2	16.073
	CNS0095596	Whole white alabastrum(diploid) 3	18.436
	CNS0095597	Whole white alabastrum(diploid) 4	14.296
	CNS0095598	Silvery flower (diploied) 1	12.290
	CNS0095599	Silvery flower (diploied) 2	10.685
	CNS0095600	Silvery flower (diploied) 3	12.522
	CNS0095601	Golden flower (diploid) 1	5.830
	CNS0095602	Golden flower (diploid) 2	6.703
	CNS0095603	Golden flower (diploid) 3	6.368
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.560
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.673
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.487
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.873
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.814
	CNS0095610	Silvery flower (tetraploid) 1	15.564
	CNS0095611	Silvery flower (tetraploid) 2	18.787
	CNS0095612	Silvery flower (tetraploid) 3	43.172
	CNS0095613	Golden flower (tetraploid) 1	5.710
	CNS0095614	Golden flower (tetraploid) 2	6.059
	CNS0095615	Golden flower (tetraploid) 3	2.900
CRA001975	CRR073297	Stem 1	15.685
	CRR073298	Stem 2	15.047
	CRR073299	Stem 3	14.632
	CRR073300	Leaf 1	17.060
	CRR073301	Leaf 2	14.622
	CRR073302	Leaf 3	16.680
	CRR073303	Juvenile bud 1	13.539
	CRR073304	Juvenile bud 2	13.903
	CRR073305	Juvenile bud 3	7.969
	CRR073306	Third green 1	5.421
	CRR073307	Third green 2	4.265
	CRR073308	Third green 3	5.833
	CRR073309	Second white 1	7.062
	CRR073310	Second white 2	4.639
	CRR073311	Second white 3	2.976
	CRR073312	Silver flowering 1	1.400
	CRR073313	Silver flowering 2	1.952
	CRR073314	Silver flowering 3	1.006
	CRR073315	Gold flowering 1	11.761
	CRR073316	Gold flowering 2	10.899
	CRR073317	Gold flowering 3	7.256
	CRR073318	Tawny withering 1	5.397
	CRR073319	Tawny withering 2	7.281
	CRR073320	Tawny withering 3	8.545