Gene detail

Detail information of GWHGAAZE012822

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653900.1	PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Vitis vinifera]
Swissprot	tr\|Q7X9V2\|PIE1_ARATH	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
trEMBL	tr\|F6HLJ9\|F6HLJ9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55255.1}
TAIR10	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92132977	92140185	+
GWHAAZE00000003	mRNA	92132977	92140185	+
GWHAAZE00000003	exon	92132977	92133048	+
GWHAAZE00000003	exon	92133152	92133240	+
GWHAAZE00000003	exon	92133365	92133408	+
GWHAAZE00000003	exon	92133516	92133577	+
GWHAAZE00000003	exon	92135292	92135427	+
GWHAAZE00000003	exon	92136269	92136343	+
GWHAAZE00000003	exon	92136425	92136506	+
GWHAAZE00000003	exon	92136588	92136639	+
GWHAAZE00000003	exon	92137451	92137489	+
GWHAAZE00000003	exon	92137928	92137996	+
GWHAAZE00000003	exon	92138620	92138682	+
GWHAAZE00000003	exon	92138769	92139907	+
GWHAAZE00000003	exon	92139975	92140185	+
GWHAAZE00000003	CDS	92132977	92133048	+
GWHAAZE00000003	CDS	92133152	92133240	+
GWHAAZE00000003	CDS	92133365	92133408	+
GWHAAZE00000003	CDS	92133516	92133577	+
GWHAAZE00000003	CDS	92135292	92135427	+
GWHAAZE00000003	CDS	92136269	92136343	+
GWHAAZE00000003	CDS	92136425	92136506	+
GWHAAZE00000003	CDS	92136588	92136639	+
GWHAAZE00000003	CDS	92137451	92137489	+
GWHAAZE00000003	CDS	92137928	92137996	+
GWHAAZE00000003	CDS	92138620	92138682	+
GWHAAZE00000003	CDS	92138769	92139907	+
GWHAAZE00000003	CDS	92139975	92140185	+

Transcript Sequence
>GWHTAAZE012836 ATGTGGTCAGGAAGAAGAGCACCGGTTGAGAAAAGTTGCGCTCAATATTTCCAAGGATGTGAAGAAATTCTGGTGATGTACAAGCATCAGTTAGAGCTTGATGAGAAAAAGAAAAAGGCACTTGATAAACAGCTTGAGTTTCTTCTAGGGCAAACAGAAAGGTACTCAACAATGCTGGCAGAAAACCTTGTAGGCCCCAATGTTGAATCTCAATCAAATATTGTAGATAATGATGAAGATTTTGATTTACAGTCCGAAGATGAATCAGAAGATGATGAGCATACTATCGAGGAAGATGAAGCCCTCATAACTAAAGAAGAAAGGCAAGAAGAACTGGCCGCTTTGCACAATGAAATTGATCTACCTCTTGAGGAATTACTAAAGCGATATGCTGCTGAGGAATCTGGCAGAGAAAGTAGCCCTGAAAAGAATGCAGATGTAGATGAACCAACTTTGGCAGGGGAAAATGCCAGTGAGAGCAAAGAAAATGATACTTCTGCTGGTCCTAATGTTGAAAGAAGCATCTCCACTGAAGTCCCTGATCGTCCGTTGTGTAAGTTGGTGAAAGCAATGGGGCTTTTCGATTTCGAAAACCATCTACCAGAAGTTGTGGAGGATGATGATTTTGTTCTTGCTAATGGAGAAGAAAAGGATGATGAGACAACATTGTCAGAGGAAGAAGAACTAGCAAAGACAGAATCAAATAATGTCATAGACGAGATTGCGCTACTGCAGAAAGAGAGCGAGATTTCAATAGAAGATTTGCTTGCAAGGTATAAAAAGGGCTCAAACACCGATGAAGACATGCAGGACGATTCCGAATCTGACTATGCTTCTGCTTCTCCTTCTCCTTCTGAAGATTTCTCGGATTCTCGAGCAGAGGAAGATGGTCAACAGAATCTGCAGCATGGTCCCACGGATGAAGGTTATGAACCTAGTGAAATTCATCCAACAGCTGTAATTGAGGGACAGGAAGGTGGACCTGATCTAAAATCTGAAGAAAAAGACAGTGAGAACAGAATTGCCGATGCAGCTGCTGCTGCTATGTCAGCACAGCCAACTGGAAACACATTTTCGACGACAAAAGTGCGCACGAAGTACCCTTTTCTTCTCAAGTTCTCCCTTCGCGAGTATCAACACATTGGCTTGGACTGGCTTGTGACAATGTACGAGAAGAGACTTAATGGGATTCTAGCTGATGAAATGGGCCTCGGGAAGACAATTATGACAATTGCCCTGCTTGCTCACCTTGCATGTGAAAAGGGTATATGGGGCCCACATCTCATTGTTGTTCCCACCAGTGTAATGCTCAACTGGGAAACTGAGTTTCTCAAATGGTGCCCCGCTTTTAAAATACTGACATATTTCGGAAGTGCAAAAGAGCGCAAAATTAAACGGCAAGGATGGTTGAAACCGAATTCATTTCATGTATGCATTACGACTTACCGACTTGTTATACAGGATTCTAAGGTTTTCAAGCGAAAGAAATGGAAATACTTGATTTTGGATGAGGCCCATTTAATAAAAAACTGGAAGTCTCAGCGATGGCAAACTCTTCTCAATTTTAATCTGAAACGCCAGATCCTTCTAACTGGTACTCCCCTGCAGAATGATCTTATGGAGCTATGGTCTCTTATGCATTTCTTGATGCCACACATTTTTCAGTCTCATCAAGAATTTAAGGATTGGTTCAGTAATCCGATATCGGGAATGGTAGATGGTCAAGAAAAAGTCAATAAAGAAGTCATTGACCGCTTGCATAATGTCCTTCGTCCTTTTATACTCCGCCGATTGAAACGAGATGTGGAGAAACAGCTACCTATGAAAGTTGAGCACGTCATTTGCTGTAGACTCTCTAGGAGGCAGCGTAATTTGTATGAAGACTTCATTGCTAGCTCAGAGACCCAAGCTACTCTAGCGAAGCCGCCAATTGTTAGTTCTTTTGACATGACCGGCATCGACATGCAGCTAAGTTCTTTGGTTTGTTCGGTACTTACACCTGGCCCTTTTTCTACCGTTGATCTCAGTGGTTTGGGATTTCTGTTCACCCATCTTGATTTTAGCATGGCTTCTTGGGAGAGTGATGAAGTTCAAGCTATTGCTACACCATCAAGCTTAATCGAGGGCGTGTGA

Network for GWHGAAZE012822

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	389	640	1.80E-65

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.990
	SRR3591706	second leaf	1.308
	SRR3591707	mature leaf	1.568
	SRR3591708	Shoot apex	2.753
	SRR3591709	Stem	2.274
	SRR3591710	White floral bud	2.569
	SRR3591711	White flower	2.002
	SRR3591712	Green floral bud	2.316
	SRR3591713	Yellow flower	2.211
SRP173429	SRR8316895	Juvenile bud stage	1.621
	SRR8316896	Juvenile bud stage	2.224
	SRR8316897	Juvenile bud stage	1.272
	SRR8316894	Third green stage	1.005
	SRR8316900	Third green stage	2.394
	SRR8316901	Third green stage	1.627
	SRR8316898	Complete white stage	1.039
	SRR8316899	Complete white stage	2.782
	SRR8316903	Complete white stage	2.852
	SRR8316902	Silver flowering stage	0.792
	SRR8316904	Silver flowering stage	2.167
	SRR8316905	Silver flowering stage	0.684
	SRR8316906	Gold flowering stage	2.886
	SRR8316907	Gold flowering stage	2.313
	SRR8316908	Gold flowering stage	3.377
SRP132670	SRR6706286	Control	2.057
	SRR6706287	Light intensity 50%	2.242
	SRR6706288	Light intensity 20%	2.257
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.509
	CNS0095593	Slightly white alabastrum(diploid) 2	0.669
	CNS0095594	Slightly white alabastrum(diploid) 3	1.023
	CNS0095595	Whole white alabastrum(diploid) 2	1.032
	CNS0095596	Whole white alabastrum(diploid) 3	0.407
	CNS0095597	Whole white alabastrum(diploid) 4	0.969
	CNS0095598	Silvery flower (diploied) 1	1.711
	CNS0095599	Silvery flower (diploied) 2	1.918
	CNS0095600	Silvery flower (diploied) 3	3.246
	CNS0095601	Golden flower (diploid) 1	1.693
	CNS0095602	Golden flower (diploid) 2	4.433
	CNS0095603	Golden flower (diploid) 3	4.176
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.096
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.185
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.223
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.192
	CNS0095610	Silvery flower (tetraploid) 1	1.975
	CNS0095611	Silvery flower (tetraploid) 2	2.383
	CNS0095612	Silvery flower (tetraploid) 3	1.761
	CNS0095613	Golden flower (tetraploid) 1	0.596
	CNS0095614	Golden flower (tetraploid) 2	1.265
	CNS0095615	Golden flower (tetraploid) 3	2.562
CRA001975	CRR073297	Stem 1	3.412
	CRR073298	Stem 2	2.743
	CRR073299	Stem 3	1.906
	CRR073300	Leaf 1	3.224
	CRR073301	Leaf 2	2.468
	CRR073302	Leaf 3	1.070
	CRR073303	Juvenile bud 1	1.142
	CRR073304	Juvenile bud 2	1.189
	CRR073305	Juvenile bud 3	1.145
	CRR073306	Third green 1	2.058
	CRR073307	Third green 2	1.074
	CRR073308	Third green 3	2.961
	CRR073309	Second white 1	1.224
	CRR073310	Second white 2	1.946
	CRR073311	Second white 3	3.123
	CRR073312	Silver flowering 1	2.021
	CRR073313	Silver flowering 2	1.254
	CRR073314	Silver flowering 3	1.106
	CRR073315	Gold flowering 1	0.438
	CRR073316	Gold flowering 2	0.952
	CRR073317	Gold flowering 3	0.413
	CRR073318	Tawny withering 1	0.857
	CRR073319	Tawny withering 2	0.788
	CRR073320	Tawny withering 3	1.160