Gene detail

Detail information of GWHGAAZE012825

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007010504.1	Calcium dependent protein kinase 1 [Theobroma cacao]
Swissprot	tr\|Q06850\|CDPK1_ARATH	Calcium-dependent protein kinase 1
trEMBL	tr\|A0A061FWY9\|A0A061FWY9_THECC	Calcium dependent protein kinase 1 {ECO:0000313\|EMBL:EOY19314.1}
TAIR10	AT5G04870.1	calcium dependent protein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92247115	92254002	-
GWHAAZE00000003	mRNA	92247115	92254002	-
GWHAAZE00000003	exon	92247115	92247237	-
GWHAAZE00000003	exon	92248418	92248642	-
GWHAAZE00000003	exon	92249216	92249383	-
GWHAAZE00000003	exon	92250523	92250638	-
GWHAAZE00000003	exon	92251053	92251205	-
GWHAAZE00000003	exon	92251318	92251461	-
GWHAAZE00000003	exon	92253207	92254002	-
GWHAAZE00000003	CDS	92253207	92254002	-
GWHAAZE00000003	CDS	92251318	92251461	-
GWHAAZE00000003	CDS	92251053	92251205	-
GWHAAZE00000003	CDS	92250523	92250638	-
GWHAAZE00000003	CDS	92249216	92249383	-
GWHAAZE00000003	CDS	92248418	92248642	-
GWHAAZE00000003	CDS	92247115	92247237	-

Transcript Sequence
>GWHTAAZE012839 ATGGGGAATACTTGCGTTGGACCAACCATCTCAAAAAATGCCTTTTTTCAGACGGTTTCGGCCACAATATGGCGATCCCGATCACCTGAAGAAACAGATTCTACCCATAATGGAGAAACTGTTTCTCGAATACCATCTTCCAATATAGAACCCGAAGCACCAATACCTATCCAAAGCAAACCACCCGAGCAAATGACAATCCCAAAACCCGAAACAAAACAAGAACAACCCAAAAAACCCAATAAGCCCCCACAATTGAAGAGGGTGTTGAGTGCCGGCCTTCGCACCGACTCGGTTTTACAGACCAAAACTGGCAATTTGAAGGAGTTTTTCACCTTAGGGAAGAAGTTAGGACAAGGGCAATTTGGTACAACATTTCTTTGCGTGGAAAAGGCTAGTGGGAAAAAATACGCATGTAAGTCGATAGCCAAGAGGAAATTAGTGGCCGAGGATGATGTGGAGGATGTGAGGAGGGAAATTCAAATAATGCATCATTTGGCCGGGAATCCGAATGTTATAGCCATTAAAGGGGCTTATGAGGATGCCATTGCGGTTCATGTAATTATGGAATTGTGTGCCGGTGGTGAGCTTTTTGATAGGATTATTAAAAGGGGCCATTACACAGAGAGAAAGGCGGCCGAGCTTACGAGAACTATAGTTGGTGTTGTGGAGGCTTGTCATTCATTGGGAGTTATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTCGTGGATCAAAAGGAAGATTCGCTCCTCAAGACCATTGATTTTGGGTTATCGATATTCTTCAAGCCAGATGAAAAGTTTAATGATGTGGTTGGTAGCCCGTATTATGTTGCACCAGAAGTTCTACGAAAGCGCTATGGTCCTGAAGCAGATGTATGGAGTGCTGGTGTAATTGTCTACATTCTATTAAGTGGAGTACCTCCTTTTTGGGCAGAAACAGAGCAAGGAATATTTGAGCAGGTGCTGAATGGTGATCTTGACTTCACGTCGGATCCTTGGCCAAGTATTTCGGAAAGTGCAAAAGATTTGGTGAGGAGAATGCTTGTGCGTGACCCAAAAAGGCGGTTAACTGCATATGAAGTTTTGTGCCATCCTTGGGTACAAGTTAATGGTGTGGCGCCCGATAAACCTCTTGACTCCGCAGTTTTAAGTCGCATGAAACAATTTTCCGCCATGAACAAGCTCAAGAAAATGGCTCTTAGGGTTATTGCAGAGAACTTATCTGAAGAAGAAATAGCTGGCCTAAAACAGATGTTTAAGATGATAGATACAGATAACAGTGGTCAAATCACTTTTGAAGAACTCAAGGCTGGACTGGAAAGGGTTGGTGCAAATCTCAAGGAGTCTGAAATTTACGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGAACAATCGATTACGGGGAGTTTGTGGCTGCAACGTTGCATCTGAACAAAGTGGAGAGAGAAGATCATCTATTTGCAGCTTTCACGTACTTTGATAAAGATGGAAGTGGTTATATCACCCCGGATGAGCTTCAACAGGCTTGTGAGGAATTTGGCATAGAGGATGTGCGCCTCGAAGAAATGATGAGAGAAGTTGATCAAGACAATGACGGACGCATAGATTACAACGAATTTGTGGCCATGATGCAGAAAGGAAACACAGGCGCAGGAGCCAAGAACAGCCTAGAGGATAGTTTCAGCATCGGGTTTAGAGAAGCACTAAAGCTATAA

Network for GWHGAAZE012825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	112	369	1.40E-71
PF13499.7	EF-hand_7	417	477	1.80E-11
PF13499.7	EF-hand_7	487	548	1.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.358
	SRR3591706	second leaf	5.214
	SRR3591707	mature leaf	8.068
	SRR3591708	Shoot apex	5.852
	SRR3591709	Stem	13.224
	SRR3591710	White floral bud	17.641
	SRR3591711	White flower	19.877
	SRR3591712	Green floral bud	13.685
	SRR3591713	Yellow flower	20.407
SRP173429	SRR8316895	Juvenile bud stage	9.282
	SRR8316896	Juvenile bud stage	12.526
	SRR8316897	Juvenile bud stage	6.048
	SRR8316894	Third green stage	5.711
	SRR8316900	Third green stage	18.447
	SRR8316901	Third green stage	17.787
	SRR8316898	Complete white stage	12.013
	SRR8316899	Complete white stage	23.000
	SRR8316903	Complete white stage	19.556
	SRR8316902	Silver flowering stage	10.582
	SRR8316904	Silver flowering stage	12.917
	SRR8316905	Silver flowering stage	7.559
	SRR8316906	Gold flowering stage	30.915
	SRR8316907	Gold flowering stage	20.274
	SRR8316908	Gold flowering stage	35.542
SRP132670	SRR6706286	Control	16.727
	SRR6706287	Light intensity 50%	17.152
	SRR6706288	Light intensity 20%	17.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.490
	CNS0095593	Slightly white alabastrum(diploid) 2	11.004
	CNS0095594	Slightly white alabastrum(diploid) 3	8.434
	CNS0095595	Whole white alabastrum(diploid) 2	10.274
	CNS0095596	Whole white alabastrum(diploid) 3	9.253
	CNS0095597	Whole white alabastrum(diploid) 4	8.547
	CNS0095598	Silvery flower (diploied) 1	14.322
	CNS0095599	Silvery flower (diploied) 2	12.549
	CNS0095600	Silvery flower (diploied) 3	21.269
	CNS0095601	Golden flower (diploid) 1	16.387
	CNS0095602	Golden flower (diploid) 2	20.459
	CNS0095603	Golden flower (diploid) 3	19.694
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.500
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.544
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.589
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.229
	CNS0095610	Silvery flower (tetraploid) 1	10.671
	CNS0095611	Silvery flower (tetraploid) 2	9.447
	CNS0095612	Silvery flower (tetraploid) 3	13.485
	CNS0095613	Golden flower (tetraploid) 1	10.095
	CNS0095614	Golden flower (tetraploid) 2	12.181
	CNS0095615	Golden flower (tetraploid) 3	8.617
CRA001975	CRR073297	Stem 1	9.497
	CRR073298	Stem 2	8.791
	CRR073299	Stem 3	4.670
	CRR073300	Leaf 1	15.914
	CRR073301	Leaf 2	13.075
	CRR073302	Leaf 3	5.745
	CRR073303	Juvenile bud 1	8.545
	CRR073304	Juvenile bud 2	6.585
	CRR073305	Juvenile bud 3	7.035
	CRR073306	Third green 1	6.589
	CRR073307	Third green 2	3.561
	CRR073308	Third green 3	7.228
	CRR073309	Second white 1	2.882
	CRR073310	Second white 2	6.429
	CRR073311	Second white 3	4.628
	CRR073312	Silver flowering 1	6.087
	CRR073313	Silver flowering 2	5.501
	CRR073314	Silver flowering 3	6.166
	CRR073315	Gold flowering 1	3.524
	CRR073316	Gold flowering 2	7.327
	CRR073317	Gold flowering 3	2.103
	CRR073318	Tawny withering 1	12.026
	CRR073319	Tawny withering 2	15.118
	CRR073320	Tawny withering 3	6.291