Gene detail

Detail information of GWHGAAZE012839

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266714.2	1.488E-170	PREDICTED: apoptosis-inducing factor 2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8GXR9\|DHNA_ARATH	4E-12	Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|D7T3C0\|D7T3C0_VITVI	6E-171	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25005.3}
TAIR10	AT3G44190.1	5E-122	FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92354936	92360684	+
GWHAAZE00000003	mRNA	92354936	92360684	+
GWHAAZE00000003	exon	92354936	92355234	+
GWHAAZE00000003	exon	92357404	92357660	+
GWHAAZE00000003	exon	92357864	92357905	+
GWHAAZE00000003	exon	92358942	92359387	+
GWHAAZE00000003	exon	92360427	92360684	+
GWHAAZE00000003	five_prime_UTR	92354936	92355118	+
GWHAAZE00000003	CDS	92355119	92355234	+
GWHAAZE00000003	CDS	92357404	92357660	+
GWHAAZE00000003	CDS	92357864	92357905	+
GWHAAZE00000003	CDS	92358942	92359387	+
GWHAAZE00000003	CDS	92360427	92360684	+

Transcript Sequence
>GWHTAAZE012853 AACGAAAAATTCATTTTTCCATTTTGCTCTCCTCCTGGCTTTTCTTCTTCCGCGGAGGTAAAAGCCAGGGTAGCTATTTATCTAATCTCTCTAATATCCTCTGAACCTAGCAATTTGTAAGTTTTCTACATTCTATTAACAGACTATAGATACTCTTTGGATTTTCTTTATGTGATTTTGCCGATGGGAGATTTGGGAGGAAAGAAGAAAAAGGTGGTGGTGGTGGTTGGCGGAGGAGTAGGCGGATCCCTTGTTGCCAGAAAACTTCAATCTCATGCCGATGTTATCCTCATTGATTCGAAGGAATATTTTGAGCTTCCATGGGCTAGTTTGAGGTCCATGGTTGAACCATCATTTGCGAAAAGATCAGTTGTTAACCACTCTGAATACCTACCAAGCGCACGTGTTATCGCGTCTACTGCAGTTGAAATCACAGGCAACCATGTGTTGACTGCAGCTGGCAATCTTATTGCGTTTGATTATCTCGTCATAGCAACAGGTCACATAGAATTTAGTTCGCTTACCAGAACCGAGAAGCTCACTCATTACCAAAGAGGTCCACCAACTAGAACTGAGAGGCTCAGTGATTATGAAGCAGTGAACAAGACGATAAAATCTGCAAATTCAATATTAATAATCGGCGGGGGGCCCACTGGCGTAGAGCTAGCTGCAGAAATTGCTGTCGATTTTCCTGATAAGAAGGTGAAACTGGTACATAGTGGTTCAAGATTGATGGAATTTATTGGATATAAGGCTAGTCGAAAGGCACTTGATTGGTTGACTTCAAGAAAAGTCGAGGTCATCTTGGGCCAATCCGTGGATATGAAATCTATCTTGGATGGTGTGTATCGAACATCTGGTGGTGAAATGCTCACAGCTGATATCCATTTCAATTGCACTGGTAAAAAGATGGGCTCATCATGGCTTAAGGAGACTCATTTGCAGGATAGTATTGATATTCATGGAAGGTTGATGGTTGATGCAAATTTGAGAGTTAAGGGTCACAAGAATATCTTTGGCATTGGAGATATTACTGATATCCCGGAAATCAAACAAGGGTATTTGGCTCAAAGGCACGCATTGGTAGCAGTGAAGAACTTGAGGTTGTTAATGGCGGGAGGGAACGAGAGCAGAATGGCGGTTTACAAGCCGGCTCCACCCATTGCCATTATATCCCTCGGAAGGAAAGAGGCTGTTGCACAAGTTTACTGTATAACTTCCATTGGATGCGTACCGGGTATGGTAAAATCTGGGGACTTGTTTGTGGGGAAGACAAGGAAACAACTTGGGCTTAAACCCTAG

Network for GWHGAAZE012839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	12	296	8.70E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22745	AIFM2	p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.325
	SRR3591706	second leaf	3.169
	SRR3591707	mature leaf	3.581
	SRR3591708	Shoot apex	8.078
	SRR3591709	Stem	7.640
	SRR3591710	White floral bud	25.411
	SRR3591711	White flower	10.060
	SRR3591712	Green floral bud	21.586
	SRR3591713	Yellow flower	9.003
SRP173429	SRR8316895	Juvenile bud stage	4.671
	SRR8316896	Juvenile bud stage	8.700
	SRR8316897	Juvenile bud stage	3.366
	SRR8316894	Third green stage	3.534
	SRR8316900	Third green stage	16.341
	SRR8316901	Third green stage	13.995
	SRR8316898	Complete white stage	6.989
	SRR8316899	Complete white stage	13.657
	SRR8316903	Complete white stage	10.052
	SRR8316902	Silver flowering stage	5.554
	SRR8316904	Silver flowering stage	9.673
	SRR8316905	Silver flowering stage	4.937
	SRR8316906	Gold flowering stage	11.610
	SRR8316907	Gold flowering stage	9.377
	SRR8316908	Gold flowering stage	10.740
SRP132670	SRR6706286	Control	13.285
	SRR6706287	Light intensity 50%	14.337
	SRR6706288	Light intensity 20%	15.735
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.013
	CNS0095593	Slightly white alabastrum(diploid) 2	13.640
	CNS0095594	Slightly white alabastrum(diploid) 3	10.599
	CNS0095595	Whole white alabastrum(diploid) 2	20.620
	CNS0095596	Whole white alabastrum(diploid) 3	30.847
	CNS0095597	Whole white alabastrum(diploid) 4	30.072
	CNS0095598	Silvery flower (diploied) 1	6.577
	CNS0095599	Silvery flower (diploied) 2	5.926
	CNS0095600	Silvery flower (diploied) 3	12.854
	CNS0095601	Golden flower (diploid) 1	5.201
	CNS0095602	Golden flower (diploid) 2	7.421
	CNS0095603	Golden flower (diploid) 3	6.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.126
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.076
	CNS0095610	Silvery flower (tetraploid) 1	17.959
	CNS0095611	Silvery flower (tetraploid) 2	17.243
	CNS0095612	Silvery flower (tetraploid) 3	18.915
	CNS0095613	Golden flower (tetraploid) 1	8.818
	CNS0095614	Golden flower (tetraploid) 2	12.231
	CNS0095615	Golden flower (tetraploid) 3	12.040
CRA001975	CRR073297	Stem 1	8.178
	CRR073298	Stem 2	7.196
	CRR073299	Stem 3	7.416
	CRR073300	Leaf 1	16.027
	CRR073301	Leaf 2	12.929
	CRR073302	Leaf 3	11.823
	CRR073303	Juvenile bud 1	13.210
	CRR073304	Juvenile bud 2	10.824
	CRR073305	Juvenile bud 3	8.096
	CRR073306	Third green 1	12.244
	CRR073307	Third green 2	9.119
	CRR073308	Third green 3	10.068
	CRR073309	Second white 1	7.041
	CRR073310	Second white 2	8.975
	CRR073311	Second white 3	6.531
	CRR073312	Silver flowering 1	6.398
	CRR073313	Silver flowering 2	4.247
	CRR073314	Silver flowering 3	5.599
	CRR073315	Gold flowering 1	5.861
	CRR073316	Gold flowering 2	6.440
	CRR073317	Gold flowering 3	4.960
	CRR073318	Tawny withering 1	5.645
	CRR073319	Tawny withering 2	5.752
	CRR073320	Tawny withering 3	4.969