Gene detail

Detail information of GWHGAAZE012864

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009792788.1	PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana sylvestris]
trEMBL	tr\|D7TXN8\|D7TXN8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35263.3}
TAIR10	AT3G54250.1	GHMP kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92804219	92809103	+
GWHAAZE00000003	mRNA	92804219	92809103	+
GWHAAZE00000003	exon	92804219	92804437	+
GWHAAZE00000003	exon	92805196	92805394	+
GWHAAZE00000003	exon	92805536	92805599	+
GWHAAZE00000003	exon	92805784	92805851	+
GWHAAZE00000003	exon	92805946	92806016	+
GWHAAZE00000003	exon	92806739	92806825	+
GWHAAZE00000003	exon	92807419	92807576	+
GWHAAZE00000003	exon	92807674	92807722	+
GWHAAZE00000003	exon	92808482	92808606	+
GWHAAZE00000003	exon	92808884	92809103	+
GWHAAZE00000003	CDS	92804219	92804437	+
GWHAAZE00000003	CDS	92805196	92805394	+
GWHAAZE00000003	CDS	92805536	92805599	+
GWHAAZE00000003	CDS	92805784	92805851	+
GWHAAZE00000003	CDS	92805946	92806016	+
GWHAAZE00000003	CDS	92806739	92806825	+
GWHAAZE00000003	CDS	92807419	92807576	+
GWHAAZE00000003	CDS	92807674	92807722	+
GWHAAZE00000003	CDS	92808482	92808606	+
GWHAAZE00000003	CDS	92808884	92809103	+

Transcript Sequence
>GWHTAAZE012878 ATTATGGCTGATGAATCTCAGAAATGGGTTTTAGTTCTCACGGCTCAGACCCCGACTAACATAGCAGTGATTAAGTACTGGGGAAAGCGAGACGAAAATCTAATATTGGCGATCAATGATAGCATAAGTGTTACTCTGGATCCGGATCATTTGTGTACTACTACCTCCGTAGCTGTTAGTCCTACCTTTGACCAGGATCGCATGTGGCTCAATGGCAAGGAGATATCTCTTCTCGGAGGTAGATACCAAAATTGTTTGAGGGAAATTCGATCACGTGCTAGTGATCTTGAGGATGAGAAAAAAGGTATCAAGATCGCCAAAAAGGATTGGGAGAACCTGCATGTGCACATTGCTTCTCATAACAATTTCCCCACTGCTGCTGGATTGGCTTCCTCTGCTGCTGGATTGGCTTGCCTCGTTTTTTCCCTTGCAAAGTTAATGAATGTGAAAGAAGATCAGGGACAATTGTCTGCTATTGCTAGGCAGGGCTCAGGCAGTGCTTGTCGCAGTTTATATGGTGGATTTGTCAAGTGGGTCATGGGAAAAGTAGGAAGCGACAGCATTGCTATTCAACTTGCAGATGAGAAACATTGGGATGAACTTGTTATCATTATTGCAGTGGTAAGTTCGCGGCAGAAGGAAACGAGTAGCACATCAGGAATGCGCGATAGCGTCGAAACGAGTGCGCTTATACAACACAGAGCAAAGGAAGTTGTACCAAAACGCATAGTACAAATGGAAGAAGCCATTAAGAATCGGGACTTCCCATCTTTTGCACATCTAACTTGTGCTGACAGTAATCAGTTTCACGCGGTCTGCCTAGATACATATCCCCCTATTTTCTACATGAACGACACATCCCATAAGATAATCAGCTGCATTGAGAAATGGAATCGTTCTGAAGGAACACCTCAGGTCGCTTATACTTTTGATGCGGGCCCAAACGCAGTCATGATAGCGCGTAATAGGAAGACCGCGGCCCTTTTGCTCCAGAGGCTGCTCTTTCATTTCCCTCCCCATTCAGATACTAATTTGGACAGTTATGTTATTGGTGATAAGTCCATACTCCAAGATGCCGGGGTCCAAGACATGAAGGATATTGAAACTTTGCCCCCACCTCCAGAAATCAAAGATAACGTACCCGCCCAAAAATCTAAGGGAGATGTTAGTTACTTCATCTGCACGCGACCAGGGAGAGGCCCTGTTTTGCTACCCGAAAGCCAATCTCTCCTCAACCCTGAAACTGGGCTGCCCAAGTAA

Network for GWHGAAZE012864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00288.27	GHMP_kinases_N	116	174	1.10E-06
PF18376.2	MDD_C	203	403	5.30E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01597	MVD, mvaD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0019287	biological_process	isopentenyl diphosphate biosynthetic process, mevalonate pathway
GO:0005829	cellular_component	cytosol
GO:0005524	molecular_function	ATP binding
GO:0016831	molecular_function	carboxy-lyase activity
GO:0004163	molecular_function	diphosphomevalonate decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.350
	SRR3591706	second leaf	62.947
	SRR3591707	mature leaf	25.671
	SRR3591708	Shoot apex	97.194
	SRR3591709	Stem	73.906
	SRR3591710	White floral bud	91.031
	SRR3591711	White flower	83.450
	SRR3591712	Green floral bud	104.248
	SRR3591713	Yellow flower	73.170
SRP173429	SRR8316895	Juvenile bud stage	44.633
	SRR8316896	Juvenile bud stage	58.026
	SRR8316897	Juvenile bud stage	27.608
	SRR8316894	Third green stage	26.446
	SRR8316900	Third green stage	110.217
	SRR8316901	Third green stage	99.119
	SRR8316898	Complete white stage	56.784
	SRR8316899	Complete white stage	145.955
	SRR8316903	Complete white stage	68.910
	SRR8316902	Silver flowering stage	51.051
	SRR8316904	Silver flowering stage	65.511
	SRR8316905	Silver flowering stage	34.070
	SRR8316906	Gold flowering stage	155.493
	SRR8316907	Gold flowering stage	114.115
	SRR8316908	Gold flowering stage	164.084
SRP132670	SRR6706286	Control	125.836
	SRR6706287	Light intensity 50%	117.898
	SRR6706288	Light intensity 20%	129.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.615
	CNS0095593	Slightly white alabastrum(diploid) 2	60.904
	CNS0095594	Slightly white alabastrum(diploid) 3	53.098
	CNS0095595	Whole white alabastrum(diploid) 2	60.893
	CNS0095596	Whole white alabastrum(diploid) 3	61.553
	CNS0095597	Whole white alabastrum(diploid) 4	66.399
	CNS0095598	Silvery flower (diploied) 1	43.053
	CNS0095599	Silvery flower (diploied) 2	52.723
	CNS0095600	Silvery flower (diploied) 3	105.337
	CNS0095601	Golden flower (diploid) 1	36.080
	CNS0095602	Golden flower (diploid) 2	65.858
	CNS0095603	Golden flower (diploid) 3	66.467
	CNS0095604	Slightly white alabastrum(tetraploid) 1	91.248
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.071
	CNS0095606	Slightly white alabastrum(tetraploid) 3	135.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.417
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.825
	CNS0095609	Whole white alabastrum(tetraploid) 3	142.951
	CNS0095610	Silvery flower (tetraploid) 1	91.850
	CNS0095611	Silvery flower (tetraploid) 2	88.346
	CNS0095612	Silvery flower (tetraploid) 3	73.900
	CNS0095613	Golden flower (tetraploid) 1	44.435
	CNS0095614	Golden flower (tetraploid) 2	69.594
	CNS0095615	Golden flower (tetraploid) 3	30.308
CRA001975	CRR073297	Stem 1	65.042
	CRR073298	Stem 2	67.298
	CRR073299	Stem 3	64.013
	CRR073300	Leaf 1	129.498
	CRR073301	Leaf 2	116.968
	CRR073302	Leaf 3	133.527
	CRR073303	Juvenile bud 1	181.371
	CRR073304	Juvenile bud 2	214.777
	CRR073305	Juvenile bud 3	189.014
	CRR073306	Third green 1	105.833
	CRR073307	Third green 2	93.574
	CRR073308	Third green 3	85.480
	CRR073309	Second white 1	89.925
	CRR073310	Second white 2	57.517
	CRR073311	Second white 3	42.733
	CRR073312	Silver flowering 1	43.844
	CRR073313	Silver flowering 2	45.980
	CRR073314	Silver flowering 3	37.228
	CRR073315	Gold flowering 1	16.183
	CRR073316	Gold flowering 2	17.241
	CRR073317	Gold flowering 3	17.208
	CRR073318	Tawny withering 1	77.088
	CRR073319	Tawny withering 2	70.106
	CRR073320	Tawny withering 3	45.325