Gene detail

Detail information of GWHGAAZE012879

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603249.1	7.03634E-85	PREDICTED: RING-H2 finger protein ATL38-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9C7I1\|ATL34_ARATH	2E-16	RING-H2 finger protein ATL34 (Precursor)
trEMBL	tr\|A0A061FRE6\|A0A061FRE6_THECC	2E-84	RING/U-box superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY19197.1}
TAIR10	AT1G35330.1	8E-15	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93097358	93102280	+
GWHAAZE00000003	mRNA	93097358	93102280	+
GWHAAZE00000003	exon	93097358	93097513	+
GWHAAZE00000003	exon	93099162	93099325	+
GWHAAZE00000003	exon	93101878	93102280	+
GWHAAZE00000003	CDS	93097358	93097513	+
GWHAAZE00000003	CDS	93099162	93099325	+
GWHAAZE00000003	CDS	93101878	93102280	+

Transcript Sequence
>GWHTAAZE012893 ATGAGTCCTGGAGTGAATTTGGTGATGACTGTGATTGGATTTACTGTGAGTACGATGTTCATCCTCTTCGTCTGTACCAGGCTCATTTGTGCCAGGATTCAATTGACTGCTTTAAGGCACTCTTTTTCAACTGCTTCTAGATCTGAACTTAGCACTGTTTGTACTGGGAATTTTTCTTGCAAACATGAGCCAATAAGGATTCTTCAATTTCCTGTGGTGCAGATAGAAAGGGGCTTGCATGGCGTAGAGCCTGTTGTTGTAGCCAATTTTCCAACAAAAAAATACAGTGATCCATTTTTTCCTTTTGCTGAAGATGCTCAGTGCATAGTTTGCCTAGCTGAATACCACGGAGAAGACACACTGCGTATATTACCCTTTTGCGGACACGCATTCCACACAACCTGCATCGACATATGGCTGCAGCAGCGGTCAACTTGCCCTGTTTGTCGGATTTCACTGCGCGATCATCAAATTCCTGAGAAGAAGCAATTGATGCAGCCGATGTTCAGTTCAACTTCAACCTTCCGATCCCATCAGTATGGATCCAATTCCCTTGATATGAATCCTTGTCACTGTTTACCGGCCAATCAACAGGTTTTGTTGAGAGAGCATGACAACCGTGGGATCAACCCAACCCGGGAATCGGAGGGCGGAGGAGGTGAGGGTAGTGAAAGCACAAAATATTTGGAAATCAAGCTTGTGGAGAGTCCTTCAAATGCATAA

Network for GWHGAAZE012879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	107	150	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.659
	SRR3591706	second leaf	3.909
	SRR3591707	mature leaf	3.699
	SRR3591708	Shoot apex	11.097
	SRR3591709	Stem	3.208
	SRR3591710	White floral bud	3.252
	SRR3591711	White flower	1.840
	SRR3591712	Green floral bud	5.224
	SRR3591713	Yellow flower	0.921
SRP173429	SRR8316895	Juvenile bud stage	1.509
	SRR8316896	Juvenile bud stage	2.352
	SRR8316897	Juvenile bud stage	1.410
	SRR8316894	Third green stage	0.879
	SRR8316900	Third green stage	4.588
	SRR8316901	Third green stage	4.214
	SRR8316898	Complete white stage	0.989
	SRR8316899	Complete white stage	5.996
	SRR8316903	Complete white stage	1.758
	SRR8316902	Silver flowering stage	0.626
	SRR8316904	Silver flowering stage	0.478
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.903
	SRR8316907	Gold flowering stage	0.486
	SRR8316908	Gold flowering stage	0.654
SRP132670	SRR6706286	Control	4.791
	SRR6706287	Light intensity 50%	5.667
	SRR6706288	Light intensity 20%	7.814
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.948
	CNS0095593	Slightly white alabastrum(diploid) 2	4.208
	CNS0095594	Slightly white alabastrum(diploid) 3	5.935
	CNS0095595	Whole white alabastrum(diploid) 2	3.449
	CNS0095596	Whole white alabastrum(diploid) 3	2.742
	CNS0095597	Whole white alabastrum(diploid) 4	2.333
	CNS0095598	Silvery flower (diploied) 1	4.038
	CNS0095599	Silvery flower (diploied) 2	2.113
	CNS0095600	Silvery flower (diploied) 3	1.828
	CNS0095601	Golden flower (diploid) 1	1.526
	CNS0095602	Golden flower (diploid) 2	0.910
	CNS0095603	Golden flower (diploid) 3	1.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.759
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.032
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.509
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.359
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.419
	CNS0095610	Silvery flower (tetraploid) 1	2.578
	CNS0095611	Silvery flower (tetraploid) 2	3.142
	CNS0095612	Silvery flower (tetraploid) 3	1.171
	CNS0095613	Golden flower (tetraploid) 1	0.607
	CNS0095614	Golden flower (tetraploid) 2	0.625
	CNS0095615	Golden flower (tetraploid) 3	0.253
CRA001975	CRR073297	Stem 1	4.694
	CRR073298	Stem 2	6.436
	CRR073299	Stem 3	7.111
	CRR073300	Leaf 1	7.028
	CRR073301	Leaf 2	9.981
	CRR073302	Leaf 3	9.342
	CRR073303	Juvenile bud 1	7.728
	CRR073304	Juvenile bud 2	6.349
	CRR073305	Juvenile bud 3	9.025
	CRR073306	Third green 1	0.518
	CRR073307	Third green 2	0.217
	CRR073308	Third green 3	1.052
	CRR073309	Second white 1	0.078
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.468
	CRR073312	Silver flowering 1	0.164
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.428
	CRR073315	Gold flowering 1	5.494
	CRR073316	Gold flowering 2	4.995
	CRR073317	Gold flowering 3	7.278
	CRR073318	Tawny withering 1	4.829
	CRR073319	Tawny withering 2	5.840
	CRR073320	Tawny withering 3	4.356