Gene detail

Detail information of GWHGAAZE012888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006492175.1	0	PREDICTED: transcriptional activator DEMETER-like isoform X3 [Citrus sinensis]
Swissprot	tr\|Q8LK56\|DME_ARATH	0	Transcriptional activator DEMETER
trEMBL	tr\|B9SY20\|B9SY20_RICCO	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF31495.1}
TAIR10	AT2G36490.1	8E-127	demeter-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93222316	93238787	+
GWHAAZE00000003	mRNA	93222316	93238787	+
GWHAAZE00000003	exon	93222316	93222853	+
GWHAAZE00000003	exon	93224133	93225827	+
GWHAAZE00000003	exon	93226441	93226776	+
GWHAAZE00000003	exon	93228036	93228126	+
GWHAAZE00000003	exon	93228331	93229579	+
GWHAAZE00000003	exon	93230080	93230159	+
GWHAAZE00000003	exon	93230283	93230367	+
GWHAAZE00000003	exon	93230695	93230786	+
GWHAAZE00000003	exon	93230864	93230932	+
GWHAAZE00000003	exon	93231067	93231103	+
GWHAAZE00000003	exon	93231185	93231267	+
GWHAAZE00000003	exon	93236539	93236970	+
GWHAAZE00000003	exon	93237513	93237549	+
GWHAAZE00000003	exon	93238087	93238152	+
GWHAAZE00000003	exon	93238602	93238787	+
GWHAAZE00000003	CDS	93222316	93222853	+
GWHAAZE00000003	CDS	93224133	93225827	+
GWHAAZE00000003	CDS	93226441	93226776	+
GWHAAZE00000003	CDS	93228036	93228126	+
GWHAAZE00000003	CDS	93228331	93229579	+
GWHAAZE00000003	CDS	93230080	93230159	+
GWHAAZE00000003	CDS	93230283	93230367	+
GWHAAZE00000003	CDS	93230695	93230786	+
GWHAAZE00000003	CDS	93230864	93230932	+
GWHAAZE00000003	CDS	93231067	93231103	+
GWHAAZE00000003	CDS	93231185	93231267	+
GWHAAZE00000003	CDS	93236539	93236970	+
GWHAAZE00000003	CDS	93237513	93237549	+
GWHAAZE00000003	CDS	93238087	93238152	+
GWHAAZE00000003	CDS	93238602	93238787	+

Transcript Sequence
>GWHTAAZE012902 ATGGACTTTGGGAGGGGATTTTCAATCCCAGATGGAAAAGGAGTTTTCCCAATGGGGGATTCTTGGTTTCCGGACACACCAGAAAAGTCTTTTCCGGTGAGACCGAGTAACCCGGCCGACATGCACGGGAATCAGCCAGGTAAATCGAACTGGGGAGATTTGCTTGGGATTTACACCGGGTTTTTGCAAGGGAAAGCTGCAAATGCTGACATGGCGGGCCAGAATTTCAATTCGGTGAGGGAATTCAACAGAGGGAATCAAAATTGTGATTTTGTTAGGGGCGATGAGAACCAGAATTTCGATCCAAGTGTTGGCTCTTATGTGGAAAATTTTGGGAATGAAAATACAGCTTGGAATAATAATCCTCTAGCAGAACTACTAATGCAAAAGAGAAATTTTGATGTATTACATAATAGGCCTACCGGTGTGAACTCGTACGCGCAATCCAAGGCTGCTAGCTCTATGCTCACGCAACAAAACCGAGATGCGGGTTCAAACCAGAGGATCAATGGATGCACCCTGCAACAAATGCCAACTGATGGATTTCAAATCCCTTACTGCACAAACTACAACCTAAATTCCCCGCCAAAATCAGTCGGGGATGCAGCTTCAAGCGTTACAAACCCATTCCCATTCGCACCCGTTACACCCAATCAAGTAAAGCAGTTAGAGAACCAACGGCTTTCCGAAATAGTGAATCATTTAATAGACGATTGCTCAAGCCAAGAGAAAGACAAGCAAGTGAACTTAGGATTGTCAATGAGCGAAGAAACCAATAACCATTATGATGAACTCTTACAGAACATCGTGGACTCATCAAAAACAGCGACGGAAAAGAACAAAGCTTTCAATGAGGGGAACGAACTTGGGTTTGACTTGAACAAGACGCCAGACCAAAAAACACCGTCGAAAAGAAGAAAACACAGGCCTAAGGTACTGAAGGAAGGGAAAGCGAAAACGACCCGTAAGCCAGCGGGTCCTAAAAACATTACCCCGAATGAGACCCCGTCAGGCAAGAGGAAGTATGTGAGGAAAGCGGACCTCAAAGTCTCGGTAGAAAGTCAAAATCCTGGCGGGCCGAGTGATGGAACAGAGCCTGCCATTAACTCGAAGTCGTGCAGGAAAGCGTTGAATTTTGACTCAGAAAATGGGGCCCAAGAGGAAATCCATGGTCGAGAAGAGGAAATGAAACGTATGAAGAAAACAGGTTTTAATTTGAACTTGGAATCTCAAGAAAATGAATTTACTGCGGTGGAAATAGATCAGCAGAATGGGCATATTACAGAGAACGGAAATCAAATGCCGGGCAGAAATATATTATTACCTGAACAGCGTGCTCCTCCAACACCTCAAGCCATCGCAAAAGACCGTGCTTTAAATCTCATCGCAAGGAATTTGAATACGAGGAATGTGAATCCATGTGAGATTTTCCTTCGAGCAGATACAAGCACAAATCTTGAAAATAATAATCCGTGCCAAAGCAAAGGAAGAAATGATGTCCGTCAACAAGGAATTGGTGAGATTTTCTTTCAAAGAGAAATGGCAAATTTCAATGAAAAAAGAGGATTCAAGAGAGAATATTACCATACTATTGAGCAAATGCGTCCCCGTTCTCTAAATATGATGGGATCTTCAATCTTTCATGTAGGTGACAATAGTGAAGGCGTCAATAATTCTGGCGCAGTGTCCTTGGAAACTTGCAAGAAAATGAAGATGGTAAACAATTTTCAAGAACCCGTTTCAAAGATGCATTCTTGTACCACTACACCTGTTAAAGATTTTGAAACAGGAGGCGTTAATGGTGTTTGTGCATATAAAGCAACTTCACAAATCAATGGTAGTCTATTGAACTCTTACTTTCAAAGAGAAAGTGCCTCCACGAAGGTAGTGAATGGTGTTCACGGGGTTGGTGGGGACCGACGTATTTACCCCATGGGACCCACTCAGGTGGAAGAAGAAAGATCTAGGGTGCCCATTCGGGTCCATGACCTTACCTCTCTTACTGCAATCACTAACTGGAACCAGATGCCGGGTACTCGGGTCAAAGAAAGTCCTACACATCATTACTTGCAAGGAAGTGAAAGTTGTCGTGTTAATAATGTGTCTACAAATAAGCACAATGTGGGTCCCACATCATCCAACCTAGGATCGTGTGGGAGAGACAAAGCGATTCAGCAACAGTACAAGGAGGCTTCGGACGGTCACCACAGAAAGTCCCCAATGAAATCAAGAGGTATTGGAAAACAGAAATTGCCATCAATTGATGAGATTATATACCTGCTGAGTGGTCTGCAAATAAATGGGCAAGAGCAAAATGCACTCGTTCCATACAAAGGAGATAATAAACTTGTTCCTTATGAGGAATTTGATCCTATAAAGAAACGCAAAGCACGGCCTAAAGTGGACCTTGACCCAGAGACTGATCGGATTTGGAAACTCTTGATGGGGAAGGAAGGAAGCAAAGGCACAGAATCAGCGGACAAGGATAAAGAAAAATGGTGGGAGGAAGAAAGGAAAGTTTTCCGTGGGCGAGCAGATTCGTTTATTGCTCGTATGCATCTTGTTCAAGGAGATAGACGGTTCTCGCGGTGGAAAGGATCCGTAGTTGACTCGGTAATAGGAGTCTTCCTCACACAGAATGTTTCAGACCATCTTTCAAGCTCTGCCTTCATGGCTCTAGCAGCAAAATTTCCCCTTCAGTCAAAAACCACCAAACAAACCTTCTACCAAAATGGATCAAATCCACTTGTTGAAGAACCAGAAATTCAATTATCGGACTTGAACCGAATAGTAAGGCCGCCAATGAACAAACCAAGCTTTACCACAATATGTGATTCACCACCACGAGATCAAAGCATAAACAATTTCTCTTCATGGACAAGAAATGCACCGGATCGAATCAGTTCGTTGCATAATTATTTTGACTCTACAATTTCTCAAACCTCTGAGGAGATCAGATCAAGCTCTGGCTCCAACTTTGAAGCAGAAGATCGAACAATTGGGTGCAGACCCATGATGAATCATGGTCCAGCTCCAATGAATCTGTTACAGACAGAAAAAGCAGCCATGTTCCAGCAATATTATATTCATGGGCAAAATACAAGACCTAGCAAAGTCGACCAACTGATAGGCTCTTCTCCGTATAATTGCCCTATCAGTTATAGGCTTCTCCATATGCAAGATTCAAGTACTTCCTGTAATTTTCAGTTGAACATGCCCCCCTACTCCGAAGTGTGTGACATGCAGAGTTTTAGCATCTTAGGAGAAGAAAGCATTTCTTCTTTGTCTAGACAGGCAATAAGTACAACCCATATGAGCAGGAGAATGGATGAGATGGGAGAAAGTGCAACTACCCAACAGAATGGAGTGCTAAGTTTCCAAAATCCAACAGTGGGTCCACATGCATTTCAAAGCCAAATTCCCACCCACCCAGGCAACATAAAAGGAGGACGTCAAAATGGAAATAATCAACATCAACAGGAGATGTCCAAATCGTTTCATGCAGAAAGCACATATGTCAAAGAGCCTATTGGACCGACCGGTACAAATTTCACAGGAAATTCTTTAAACAAGGAGAGAATATCAGTATTTGATAAGCAGAATTGCTTGGAGAATAATCCAACAGAAGCAAATGCAAGAGAGAAAACCAATTCTTTTGGCAAGGCACTTAATGGGACGAGCCCCACCAATATCTCAAAGGGAAGAAAGGGGAAGGCCGAGGATGAAAAGAACAAAGCAATTGACTGGGATAGCTTGAGGACGCAAGCTCAGTTGAATGGTAAAAGAGAAAGAAGCAAGGATTCAATGGACTCACTTGACTATGAAGCACTAAGATGTGCTGATGTGAATGAGATTTCAAATACTATCAAGGAACGTGGAATGAACAACATGCTAGCCGAAAGAATGAAGGATTTCCTAAACCGAATAGTTAGAGAACATGGAAGCATTGACCTAGAATGGTTGAGAGATGTTCCCCCAGACAAAGCAAAGGATTACCTATTAAGTGTCAGGGGACTGGGGCTGAAAAGCGTGGAGTGTGTACGTCTATTAACACTTCATCATCTTGCTTTCCCGGTTGACACAAATGTGGGGAGGATAGCGGTTAGACTGGGTTGGGTCCCACTCCAACCACTACCCGAATCGCTCCAACTGCACCTCTTGGAACTGTATCCAGTGCTGGAGTCAATTCAAAAATATCTTTGGCCTAGACTGTGCAAGCTGGATCAGCGGACTCTATATGAATTACACTACCAGATGATTACATTTGGAAAGGTTTTCTGCACGAAGAGTAAGCCGAACTGCAATGCATGTCCCATGAGAGGAGAGTGCAGACACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTTGCCCTCCCAGGGCCAGAAGAGAAAGGTATAGTGAGTCCAGCGGTTCCCTTTACACCCAACAGAAACTCTCCAATGATGGCAAGGCCCTTAGCACTACCTCCAGCTGAAAACAGCACAAACAAAGGACTCATTGAGAGAAACTGTGAACCTATAATTGAGGAACCGGCAACACCAGAGCCCGAAACAACAGAGATTACAGAAAGCGACATTGAGGATGCGTTCTACGATGATCCTGATGAAATCCCTACGATCAAGCTCAACATAGAAGAATTTGCGGTGAATCTACACAATTATATGCAAGATAACATGGAACTGCAAGATGGTGATATGTCCAAAGCTCTAGTTGCGTTAAATCCAAATGCGGCGTCAATCCCTACACAAAAACTGAAGAATGTGAGTCGACTACGGACAGAGCACCAAGTGTATGAACTTCCAGATTCACACCCTCTCCTAAAAGGGATACCATGTAGAACAGCAATGAGAGGAAGCTTTCCTCTTAATGGCACATATTTCCAAGTTAATGAGATGTTTGCTGATCATGAATCTAGTCTAAATCCAATTGATGTTCCGAGGGCATGGATATGGAACTTGTCGAGGAGGACAGTATACTTTGGAACCTCTGTGTCAACAATTTTTAAAGGTAAACCGAAAAAAACTGATAGAATATTCTATGCTTTTTCTTTTTTGCACTTAACTAATTTGGAAAGTTAA

Network for GWHGAAZE012888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15628.7	RRM_DME	1609	1674	5.70E-32

Protein Sequence

>GWHPAAZE012895
MDFGRGFSIPDGKGVFPMGDSWFPDTPEKSFPVRPSNPADMHGNQPGKSNWGDLLGIYTGFLQGKAANADMAGQNFNSVREFNRGNQNCDFVRGDENQNFDPSVGSYVENFGNENTAWNNNPLAELLMQKRNFDVLHNRPTGVNSYAQSKAASSMLTQQNRDAGSNQRINGCTLQQMPTDGFQIPYCTNYNLNSPPKSVGDAASSVTNPFPFAPVTPNQVKQLENQRLSEIVNHLIDDCSSQEKDKQVNLGLSMSEETNNHYDELLQNIVDSSKTATEKNKAFNEGNELGFDLNKTPDQKTPSKRRKHRPKVLKEGKAKTTRKPAGPKNITPNETPSGKRKYVRKADLKVSVESQNPGGPSDGTEPAINSKSCRKALNFDSENGAQEEIHGREEEMKRMKKTGFNLNLESQENEFTAVEIDQQNGHITENGNQMPGRNILLPEQRAPPTPQAIAKDRALNLIARNLNTRNVNPCEIFLRADTSTNLENNNPCQSKGRNDVRQQGIGEIFFQREMANFNEKRGFKREYYHTIEQMRPRSLNMMGSSIFHVGDNSEGVNNSGAVSLETCKKMKMVNNFQEPVSKMHSCTTTPVKDFETGGVNGVCAYKATSQINGSLLNSYFQRESASTKVVNGVHGVGGDRRIYPMGPTQVEEERSRVPIRVHDLTSLTAITNWNQMPGTRVKESPTHHYLQGSESCRVNNVSTNKHNVGPTSSNLGSCGRDKAIQQQYKEASDGHHRKSPMKSRGIGKQKLPSIDEIIYLLSGLQINGQEQNALVPYKGDNKLVPYEEFDPIKKRKARPKVDLDPETDRIWKLLMGKEGSKGTESADKDKEKWWEEERKVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVIGVFLTQNVSDHLSSSAFMALAAKFPLQSKTTKQTFYQNGSNPLVEEPEIQLSDLNRIVRPPMNKPSFTTICDSPPRDQSINNFSSWTRNAPDRISSLHNYFDSTISQTSEEIRSSSGSNFEAEDRTIGCRPMMNHGPAPMNLLQTEKAAMFQQYYIHGQNTRPSKVDQLIGSSPYNCPISYRLLHMQDSSTSCNFQLNMPPYSEVCDMQSFSILGEESISSLSRQAISTTHMSRRMDEMGESATTQQNGVLSFQNPTVGPHAFQSQIPTHPGNIKGGRQNGNNQHQQEMSKSFHAESTYVKEPIGPTGTNFTGNSLNKERISVFDKQNCLENNPTEANAREKTNSFGKALNGTSPTNISKGRKGKAEDEKNKAIDWDSLRTQAQLNGKRERSKDSMDSLDYEALRCADVNEISNTIKERGMNNMLAERMKDFLNRIVREHGSIDLEWLRDVPPDKAKDYLLSVRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKGIVSPAVPFTPNRNSPMMARPLALPPAENSTNKGLIERNCEPIIEEPATPEPETTEITESDIEDAFYDDPDEIPTIKLNIEEFAVNLHNYMQDNMELQDGDMSKALVALNPNAASIPTQKLKNVSRLRTEHQVYELPDSHPLLKGIPCRTAMRGSFPLNGTYFQVNEMFADHESSLNPIDVPRAWIWNLSRRTVYFGTSVSTIFKGKPKKTDRIFYAFSFLHLTNLES

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006284	biological_process	base-excision repair
GO:0006281	biological_process	DNA repair
GO:0003824	molecular_function	catalytic activity
GO:0051539	molecular_function	4 iron, 4 sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.910
	SRR3591706	second leaf	16.361
	SRR3591707	mature leaf	10.185
	SRR3591708	Shoot apex	17.346
	SRR3591709	Stem	21.918
	SRR3591710	White floral bud	48.337
	SRR3591711	White flower	33.484
	SRR3591712	Green floral bud	20.406
	SRR3591713	Yellow flower	17.111
SRP173429	SRR8316895	Juvenile bud stage	11.412
	SRR8316896	Juvenile bud stage	12.806
	SRR8316897	Juvenile bud stage	7.621
	SRR8316894	Third green stage	8.038
	SRR8316900	Third green stage	16.517
	SRR8316901	Third green stage	18.452
	SRR8316898	Complete white stage	6.764
	SRR8316899	Complete white stage	15.484
	SRR8316903	Complete white stage	22.410
	SRR8316902	Silver flowering stage	10.551
	SRR8316904	Silver flowering stage	21.754
	SRR8316905	Silver flowering stage	9.189
	SRR8316906	Gold flowering stage	20.911
	SRR8316907	Gold flowering stage	23.245
	SRR8316908	Gold flowering stage	25.039
SRP132670	SRR6706286	Control	21.943
	SRR6706287	Light intensity 50%	24.159
	SRR6706288	Light intensity 20%	22.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.852
	CNS0095593	Slightly white alabastrum(diploid) 2	4.086
	CNS0095594	Slightly white alabastrum(diploid) 3	4.873
	CNS0095595	Whole white alabastrum(diploid) 2	4.717
	CNS0095596	Whole white alabastrum(diploid) 3	3.386
	CNS0095597	Whole white alabastrum(diploid) 4	5.026
	CNS0095598	Silvery flower (diploied) 1	8.752
	CNS0095599	Silvery flower (diploied) 2	7.249
	CNS0095600	Silvery flower (diploied) 3	16.523
	CNS0095601	Golden flower (diploid) 1	6.431
	CNS0095602	Golden flower (diploid) 2	13.454
	CNS0095603	Golden flower (diploid) 3	11.633
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.860
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.260
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.622
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.899
	CNS0095610	Silvery flower (tetraploid) 1	21.024
	CNS0095611	Silvery flower (tetraploid) 2	13.771
	CNS0095612	Silvery flower (tetraploid) 3	45.197
	CNS0095613	Golden flower (tetraploid) 1	5.785
	CNS0095614	Golden flower (tetraploid) 2	9.032
	CNS0095615	Golden flower (tetraploid) 3	12.490
CRA001975	CRR073297	Stem 1	15.662
	CRR073298	Stem 2	13.957
	CRR073299	Stem 3	8.329
	CRR073300	Leaf 1	13.802
	CRR073301	Leaf 2	11.154
	CRR073302	Leaf 3	8.857
	CRR073303	Juvenile bud 1	6.067
	CRR073304	Juvenile bud 2	5.178
	CRR073305	Juvenile bud 3	11.323
	CRR073306	Third green 1	13.665
	CRR073307	Third green 2	8.035
	CRR073308	Third green 3	17.074
	CRR073309	Second white 1	7.297
	CRR073310	Second white 2	16.024
	CRR073311	Second white 3	20.340
	CRR073312	Silver flowering 1	7.115
	CRR073313	Silver flowering 2	8.499
	CRR073314	Silver flowering 3	9.067
	CRR073315	Gold flowering 1	1.455
	CRR073316	Gold flowering 2	5.265
	CRR073317	Gold flowering 3	1.233
	CRR073318	Tawny withering 1	5.466
	CRR073319	Tawny withering 2	4.685
	CRR073320	Tawny withering 3	4.984