Gene detail

Detail information of GWHGAAZE012894

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO99847.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4J3T8\|MYTM1_ARATH	Phosphatidylinositol-3-phosphatase myotubularin-1
trEMBL	tr\|A0A068TUY0\|A0A068TUY0_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99847.1}
TAIR10	AT3G10550.1	Myotubularin-like phosphatases II superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93351016	93374581	+
GWHAAZE00000003	mRNA	93351016	93374581	+
GWHAAZE00000003	exon	93351016	93351165	+
GWHAAZE00000003	exon	93351299	93351367	+
GWHAAZE00000003	exon	93352867	93352941	+
GWHAAZE00000003	exon	93354692	93354724	+
GWHAAZE00000003	exon	93356304	93356373	+
GWHAAZE00000003	exon	93357249	93357298	+
GWHAAZE00000003	exon	93362778	93363067	+
GWHAAZE00000003	exon	93363600	93363673	+
GWHAAZE00000003	exon	93363756	93363819	+
GWHAAZE00000003	exon	93364013	93364078	+
GWHAAZE00000003	exon	93364776	93364899	+
GWHAAZE00000003	exon	93364997	93365110	+
GWHAAZE00000003	exon	93366845	93367014	+
GWHAAZE00000003	exon	93368813	93368897	+
GWHAAZE00000003	exon	93371266	93371475	+
GWHAAZE00000003	exon	93372386	93372445	+
GWHAAZE00000003	exon	93372586	93372650	+
GWHAAZE00000003	exon	93373445	93373724	+
GWHAAZE00000003	exon	93374090	93374581	+
GWHAAZE00000003	CDS	93351016	93351165	+
GWHAAZE00000003	CDS	93351299	93351367	+
GWHAAZE00000003	CDS	93352867	93352941	+
GWHAAZE00000003	CDS	93354692	93354724	+
GWHAAZE00000003	CDS	93356304	93356373	+
GWHAAZE00000003	CDS	93357249	93357298	+
GWHAAZE00000003	CDS	93362778	93363067	+
GWHAAZE00000003	CDS	93363600	93363673	+
GWHAAZE00000003	CDS	93363756	93363819	+
GWHAAZE00000003	CDS	93364013	93364078	+
GWHAAZE00000003	CDS	93364776	93364899	+
GWHAAZE00000003	CDS	93364997	93365110	+
GWHAAZE00000003	CDS	93366845	93367014	+
GWHAAZE00000003	CDS	93368813	93368897	+
GWHAAZE00000003	CDS	93371266	93371475	+
GWHAAZE00000003	CDS	93372386	93372445	+
GWHAAZE00000003	CDS	93372586	93372650	+
GWHAAZE00000003	CDS	93373445	93373724	+
GWHAAZE00000003	CDS	93374090	93374581	+

Transcript Sequence
>GWHTAAZE012908 ATGCCCCCGCCGAGATCACGAACGGGACGGTCCATATCTCTGCGGGACTCACCGACGAGTCGATTCACGGAGTTGGAGAAGATAGATGGTGGTGGTGCAAGCTGGGACGTCCTTGAATGGACCAATGTTGAAGTATTCCCATCCCCTAGGCCTGTTTCGAGGTCTGTTCCTCTCGGAGTGCTCGAATTTTTGCACGAGGCTGAAAAGGTCATCGTAGGGGGTTGTGGCGTTGTTCTTGTTAATACTGACGAGGCAGGTACCGTGTTCGTGACTAATTTTCGTCTTCTTTTCCTGCCACCAGCCATCGATGGACCACCAGGGGAGAAGGTCACCAAACATCCATCAGCCCCCCGGAATTCTGACAAGACTCCATCAAGAAGACTTCTCCAAGTCATTGGCAAAGATATGAGAATTATTGTCTTCGGTTTCCGCCCTCGGACAAAGCAGAGGCGCGTTGTGTTTGATGCACTATTGAAGTGCACAAGGCCATCAAGACTCTATGATCTCTATGCTTTTGCTTCTGGCCCTTTGAGATTCAATAGTGCCAACCCTAAGGTGCAGTTACTGAACGAGTACTACCGGCTTCTTGGTATGGGTTCATATCAAGCATCAATTGACTGTATCGAAGAGGGGTCAGTCACATGGTCTAATGAGTGCTGGAGAATTAGTGATCTCAACTCCAACTATACACTGTGCTCGACTTACCCATTTGCTTTGCTCCTTCCAAAATCCATTAGTGATGAAGAAGTAATGCAGGCTTCTACTTTCCGTGCACGCGGTCGGTTGCCTGTAGTTTCATGGTGTCATTCAGGAACTGGAGCTGTTCTTGCACGGTCAGCTCAACCATTAGTTGGTATCATGATGAATATGCGGAGCAATGCTGATGAGAAACTAGTTGCTGCACTATGCACTCCACTTGCTGGTGCAAGGGAGCCTAGAAGAAAGTTATATATTGCTGATGCGAGACCTAGAAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGTTCAGAGTCATCTTCCAATTATTTCCAATCTGAGGTCCGTCCAAGGCTTGAAAGCTGTATAGTATTCTTTGGCATAGACAATATACATGCAATGAGGGATAGTCTTGCCCGCCTTAGAGCGTACTTAGACACTCATGGCGCTACTTCATCTGATGGAATGTCATCGTTCTTGAGACATGGTGGATGGACTTGGGGTGGAGGTAATCTGAGCAGTATGTCTGCTTCTGTGTCGACTCTTGGGGACTGTGGCTGGTTAATACACATTCATAACGTTTTGGCTGGTTCTGCTTGGATTGCCGCACGTATTGCTCTGGAATCGGCTTCGGTGCTTGTTCACTGCAGTGATGGATGGGATCGAACAAGTCAGTTAGTCTCGCTTGCCAGTTTGTTGTTGGATCCTTATTATCGTACATTTAAGGGGTTTCAGGCTCTTGTAGAAAAAGATTGGCTTGCATTTGGTCATCCATTTTCTGATCGTGCTGGATTGCCAACAATCTCTGCAAGTAGTGACACACCTCACCTATCGAGGCAGTCATCAACTGGGAGCTTGCCGTCATTGCCAAGACGCCAATCATCCACATCTCGTGCTCCCTCACATGCACAATCATTGAACAACTACTCTCCTATCTTTTTGCAGTGGGTTGATTGTGTTTCACAATTGTTGCGGATGTACCCTTTTGCATTTGAATTTTCCTCGGCTTTCTTGGTAGATTTCTTGGACTCTGTGCTTTCATATCAATTTGGAAACTTCTTGTGCAATAGTGAGAAGGAGAGGCAAGAGTCTGGTGCTGTAGACACTTGCGGTTGCTTGTGGATGTATTTGGCAGAAATACGAGCTTCAGAAGGGAACTCTCATGTGCACTACAACCCTTTTTATGATCCTTCGAAACATGAAGGTCCATTATTACCTCCTGCAGCTGCTTTGGCCCCTACACTGTGGCCCCAATTCCATCTTCGGTGGGCTTGCCCCTCGGAGGCCCAAGTAGGAGAGGTTGAAGCTCAATATAGGAACATGGCTAAAAAATTCTCTGAAATTCAAAAGGGAAAAGAAGTAGCAGAAACCAAAGTAAGAGATACCACTGCTGTCATGGAGTCCTTGGCCGAGGAATTACAGAACGAGAAAATCATCAGCAGCTCAGCCACAATTTTGGCCAAGAAAGCCAGCAAAGAAAATGCAGCTGTGAGGCGAGCATTACTATCTTTGGGTTGCAAAGTTCACTTTTCGGGCATTGATAATTGTACTGTTGGCATTGAGAGAAACCAAACAAAAATTACAAATAACAAAGAGACGGTACTGCCAAATGATGAAAAATCTGATATGTCCATATCTATCTCGGTTGTGCAAGATGATGTTTCAAGCAATCCAATAAGCCGAATTTGCGAATCTTTATGCCCTTTTCGAACTCAAGATGGAGGGTGCCGATGGCCCAATGCCGGCTGTGCTCAACTTCAAAGCCAATATGTTGGCTTAAAGGCAAACTTTGATGCGTTTGATCGGCTTTCTATCTATGATAGTTATTTTAAGTCCGACTAA

Network for GWHGAAZE012894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06602.15	Myotub-related	182	595	2.50E-121

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18081	MTMR1_2	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.480
	SRR3591706	second leaf	1.549
	SRR3591707	mature leaf	2.091
	SRR3591708	Shoot apex	3.004
	SRR3591709	Stem	2.347
	SRR3591710	White floral bud	11.552
	SRR3591711	White flower	4.944
	SRR3591712	Green floral bud	26.220
	SRR3591713	Yellow flower	3.250
SRP173429	SRR8316895	Juvenile bud stage	8.957
	SRR8316896	Juvenile bud stage	14.611
	SRR8316897	Juvenile bud stage	6.286
	SRR8316894	Third green stage	7.504
	SRR8316900	Third green stage	20.143
	SRR8316901	Third green stage	20.242
	SRR8316898	Complete white stage	2.739
	SRR8316899	Complete white stage	13.083
	SRR8316903	Complete white stage	5.119
	SRR8316902	Silver flowering stage	2.233
	SRR8316904	Silver flowering stage	3.543
	SRR8316905	Silver flowering stage	1.369
	SRR8316906	Gold flowering stage	5.160
	SRR8316907	Gold flowering stage	4.060
	SRR8316908	Gold flowering stage	3.369
SRP132670	SRR6706286	Control	14.718
	SRR6706287	Light intensity 50%	16.066
	SRR6706288	Light intensity 20%	17.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.916
	CNS0095593	Slightly white alabastrum(diploid) 2	10.471
	CNS0095594	Slightly white alabastrum(diploid) 3	11.897
	CNS0095595	Whole white alabastrum(diploid) 2	20.431
	CNS0095596	Whole white alabastrum(diploid) 3	20.405
	CNS0095597	Whole white alabastrum(diploid) 4	22.845
	CNS0095598	Silvery flower (diploied) 1	10.082
	CNS0095599	Silvery flower (diploied) 2	6.662
	CNS0095600	Silvery flower (diploied) 3	6.285
	CNS0095601	Golden flower (diploid) 1	6.212
	CNS0095602	Golden flower (diploid) 2	5.780
	CNS0095603	Golden flower (diploid) 3	5.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.260
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.166
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.744
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.699
	CNS0095610	Silvery flower (tetraploid) 1	5.231
	CNS0095611	Silvery flower (tetraploid) 2	5.636
	CNS0095612	Silvery flower (tetraploid) 3	3.581
	CNS0095613	Golden flower (tetraploid) 1	2.102
	CNS0095614	Golden flower (tetraploid) 2	3.481
	CNS0095615	Golden flower (tetraploid) 3	1.883
CRA001975	CRR073297	Stem 1	16.647
	CRR073298	Stem 2	13.916
	CRR073299	Stem 3	6.826
	CRR073300	Leaf 1	26.602
	CRR073301	Leaf 2	23.999
	CRR073302	Leaf 3	10.352
	CRR073303	Juvenile bud 1	14.123
	CRR073304	Juvenile bud 2	5.844
	CRR073305	Juvenile bud 3	4.607
	CRR073306	Third green 1	0.945
	CRR073307	Third green 2	1.742
	CRR073308	Third green 3	1.592
	CRR073309	Second white 1	0.259
	CRR073310	Second white 2	0.996
	CRR073311	Second white 3	0.506
	CRR073312	Silver flowering 1	0.977
	CRR073313	Silver flowering 2	0.630
	CRR073314	Silver flowering 3	0.645
	CRR073315	Gold flowering 1	3.781
	CRR073316	Gold flowering 2	6.948
	CRR073317	Gold flowering 3	2.383
	CRR073318	Tawny withering 1	5.914
	CRR073319	Tawny withering 2	7.315
	CRR073320	Tawny withering 3	5.812