Detail information of GWHGAAZE012897


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787062.10PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Nicotiana sylvestris]
Swissprottr|Q9XF67|PDPK1_ARATH03-phosphoinositide-dependent protein kinase 1
trEMBLtr|F6I5U0|F6I5U0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62308.1}
TAIR10AT3G10540.12E-1623-phosphoinositide-dependent protein kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9342187293435461-
GWHAAZE00000003mRNA9342187293435461-
GWHAAZE00000003exon9343524693435461-
GWHAAZE00000003exon9342715493427334-
GWHAAZE00000003exon9342692393426975-
GWHAAZE00000003exon9342548593425688-
GWHAAZE00000003exon9342528793425395-
GWHAAZE00000003exon9342471993424797-
GWHAAZE00000003exon9342440293424567-
GWHAAZE00000003exon9342249893422632-
GWHAAZE00000003exon9342187293422051-
GWHAAZE00000003CDS9343524693435461-
GWHAAZE00000003CDS9342715493427334-
GWHAAZE00000003CDS9342692393426975-
GWHAAZE00000003CDS9342548593425688-
GWHAAZE00000003CDS9342528793425395-
GWHAAZE00000003CDS9342471993424797-
GWHAAZE00000003CDS9342440293424567-
GWHAAZE00000003CDS9342249893422632-
GWHAAZE00000003CDS9342187293422051-
Transcript Sequence

Network for GWHGAAZE012897

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase613605.60E-60
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyAGC_PDK1

KEGG pathway

KO Enzyme pathway mapID
K06276PDPK1 MAPK signaling pathway - yeast map04011
FoxO signaling pathwaymap04068
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
mTOR signaling pathwaymap04150
Autophagy - animalmap04140
Apoptosismap04210
Focal adhesionmap04510
T cell receptor signaling pathwaymap04660
Fc epsilon RI signaling pathwaymap04664
Insulin signaling pathwaymap04910
PPAR signaling pathwaymap03320
Thyroid hormone signaling pathwaymap04919
Aldosterone-regulated sodium reabsorptionmap04960
Neurotrophin signaling pathwaymap04722

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf50.164
SRR3591706second leaf14.741
SRR3591707mature leaf11.951
SRR3591708Shoot apex25.683
SRR3591709Stem26.311
SRR3591710White floral bud66.659
SRR3591711White flower40.647
SRR3591712Green floral bud47.824
SRR3591713Yellow flower32.419
SRP173429 SRR8316895Juvenile bud stage 16.633
SRR8316896Juvenile bud stage 25.857
SRR8316897Juvenile bud stage 14.494
SRR8316894Third green stage 12.395
SRR8316900Third green stage 39.986
SRR8316901Third green stage 34.508
SRR8316898Complete white stage 15.787
SRR8316899Complete white stage 49.000
SRR8316903Complete white stage 24.977
SRR8316902Silver flowering stage13.048
SRR8316904Silver flowering stage16.218
SRR8316905Silver flowering stage8.560
SRR8316906Gold flowering stage 22.940
SRR8316907Gold flowering stage 22.340
SRR8316908Gold flowering stage 16.715
SRP132670SRR6706286Control23.810
SRR6706287Light intensity 50%24.471
SRR6706288Light intensity 20%27.152
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.008
CNS0095593Slightly white alabastrum(diploid) 211.215
CNS0095594Slightly white alabastrum(diploid) 313.087
CNS0095595Whole white alabastrum(diploid) 217.412
CNS0095596Whole white alabastrum(diploid) 317.082
CNS0095597Whole white alabastrum(diploid) 419.955
CNS0095598Silvery flower (diploied) 114.530
CNS0095599Silvery flower (diploied) 213.815
CNS0095600Silvery flower (diploied) 329.308
CNS0095601Golden flower (diploid) 115.133
CNS0095602Golden flower (diploid) 225.341
CNS0095603Golden flower (diploid) 321.848
CNS0095604Slightly white alabastrum(tetraploid) 121.710
CNS0095605Slightly white alabastrum(tetraploid) 216.767
CNS0095606Slightly white alabastrum(tetraploid) 326.913
CNS0095607Whole white alabastrum(tetraploid) 121.446
CNS0095608Whole white alabastrum(tetraploid) 221.870
CNS0095609Whole white alabastrum(tetraploid) 329.314
CNS0095610Silvery flower (tetraploid) 121.868
CNS0095611Silvery flower (tetraploid) 223.037
CNS0095612Silvery flower (tetraploid) 322.317
CNS0095613Golden flower (tetraploid) 111.017
CNS0095614Golden flower (tetraploid) 216.916
CNS0095615Golden flower (tetraploid) 320.973
CRA001975CRR073297Stem 116.840
CRR073298Stem 215.222
CRR073299Stem 310.188
CRR073300Leaf 123.600
CRR073301Leaf 221.326
CRR073302Leaf 316.341
CRR073303Juvenile bud 114.492
CRR073304Juvenile bud 211.573
CRR073305Juvenile bud 314.805
CRR073306Third green 16.582
CRR073307Third green 26.009
CRR073308Third green 36.949
CRR073309Second white 15.179
CRR073310Second white 27.829
CRR073311Second white 34.802
CRR073312Silver flowering 15.974
CRR073313Silver flowering 24.227
CRR073314Silver flowering 34.613
CRR073315Gold flowering 15.089
CRR073316Gold flowering 27.115
CRR073317Gold flowering 31.867
CRR073318Tawny withering 111.734
CRR073319Tawny withering 210.204
CRR073320Tawny withering 312.902