Gene detail

Detail information of GWHGAAZE012909

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076897.1	0	PREDICTED: NAC domain-containing protein 78-like [Sesamum indicum]
Swissprot	tr\|Q84K00\|NAC78_ARATH	1E-144	NAC domain-containing protein 78
trEMBL	tr\|A0A068TV21\|A0A068TV21_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99814.1}
TAIR10	AT5G04410.1	2E-117	NAC domain containing protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93626773	93633729	-
GWHAAZE00000003	mRNA	93626773	93633729	-
GWHAAZE00000003	exon	93633561	93633729	-
GWHAAZE00000003	exon	93632472	93632749	-
GWHAAZE00000003	exon	93631716	93631889	-
GWHAAZE00000003	exon	93628441	93628950	-
GWHAAZE00000003	exon	93627888	93627996	-
GWHAAZE00000003	exon	93626773	93627284	-
GWHAAZE00000003	CDS	93633561	93633729	-
GWHAAZE00000003	CDS	93632472	93632749	-
GWHAAZE00000003	CDS	93631716	93631889	-
GWHAAZE00000003	CDS	93628441	93628950	-
GWHAAZE00000003	CDS	93627888	93627996	-
GWHAAZE00000003	CDS	93626773	93627284	-

Transcript Sequence
>GWHTAAZE012923 ATGGCTATAGATTCAGCATCGTCAACACTTGCTCCAGGTTTTCGATTCCACCCCACCGATGAAGAACTTGTACGCTACTACCTCAGGCGGAAGATTTGTGGAAAACCTTTTCGCTTTGATGCAATCTCTGAAATCGATATCTATAAAGTAGAGCCTTGGGACCTCCCAGGTAAGTCAAGGCTGAAGTCTAGAGATTTGGAGTGGTACTTTTTCAGTTTCCTTGATAAGAAGTATGGGAATGGATCAAAGACTAACCGGGCTACTGATAGAGGGTACTGGAAGACAACAGGGAAGGATCGGGCTGTCTACCATAGGACGCAGGTTGTTGGGATGAAGAAAACTCTGGTGTATCATAGTGGTCGGGCTCCGCGAGGTGAGAGGACTAATTGGGTCATGCATGAATACAGACTTGTTGATGAGGACTTGGGAAAATCAGGAATTCTTCAGGATGCCTTTGTGCTGTGCCGGGTGTTTCGCAAGAGCGGTTCTGGGCCAAAGAATGGGGAGCAGTATGGGGCTCCATTTATTGAGGAGGAATGGGAGGATGAAGAGTTGGTAATGGTCCCCAAGGATGAATCTGCAGATGACGGTGCTTATCTAGACGAAAATGACCTTGAGCAGATCCTTGGCACAGGTAATCCATGTGAGGATTCTCCCCCTCTGAATATTTGTTATGGGGATAATGGCAATTGTGCCCAGGAATCCACCGACGTCAGTGATGATGCTCAAAAGCTTTTGGTAGGCATGGGTGAAAATCATAGTGGGCTAGAGCAGCCTGATGACCACAACTTATTTGATTTGCCATTGCAATATAACATGGATGCAAATTCAGTTAAACATGAATATATTGGTGAACCAAGCAATAATGCAAATTCTGCAGATGTGGATTTCCTACTTGATGAACCGTTTTTAGATGCTACCAACAACCTCCAATCCAACGATGGAGCATTTCTTGAAACTAACGATCTTAAACGTCCGGTCGAGGCTGATCCCCCAGGTTTTGGCATGCTCGATGAGTATCTTACGTTCTTTGACACTAATGATGACAACACCCCGTATATGACTTTTGATCCGTCGGATATTATGGGAAGTGAGGGGCTTCTTTCTGATCCCACATTCTTCATCAATGAGTATTTAACTGATGGAACTCAACAAGTGGATATGGGAAAACAACAGCTCTTTGAAGGACATGATAACGATGTTGCATCCTCTTCACAGCAAGAGGAGAAAATTGGATCAGATCTAATGCTAGTGTCAAAACATGCCCCGTGGCATTTCTTATATTTTTTTACTTTTGAAGTAACCACACATGAAAGTGTGCATTTGGCTTCCAATTTTTCGCCTGTTCTCGTTATTGACTTTTGTACTTGTGCAGAAACCATGTGCTACAAGCGGGCCAGTTGTATTCTGGGCGATATCAATGCTCCTCCTGCCTTTGCTTCAGAGTTCCCAACAAAGGAAGCTGCCCTCCATCTAAATTCTACTTCCAGTCCACTACATGTCACTGCCGGTATGATCCAAATGAGAAACCTCACTTTGAGTGGCAACGGAATAGACTTATCCTTCAGTAAGCGTGGGCAGGTCGACATTATCCTCTCGTTCGGCCTAACTCGAGGTGATGAATATAACTTTGCCAATTCTCAAAGCAAGGCGTATTCAGCGGTTTCTCGGGGTTGGTTCTGTTTCATGTTCATTTGGGTAATGGTTCTTTCTCTAAGCTTCAAAATCGGTAGCTATATTTGTGCTAGGTAA

Network for GWHGAAZE012909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	12	137	1.10E-36

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.226
	SRR3591706	second leaf	32.671
	SRR3591707	mature leaf	45.083
	SRR3591708	Shoot apex	43.292
	SRR3591709	Stem	57.953
	SRR3591710	White floral bud	115.112
	SRR3591711	White flower	191.201
	SRR3591712	Green floral bud	71.276
	SRR3591713	Yellow flower	182.124
SRP173429	SRR8316895	Juvenile bud stage	38.083
	SRR8316896	Juvenile bud stage	58.264
	SRR8316897	Juvenile bud stage	23.572
	SRR8316894	Third green stage	20.473
	SRR8316900	Third green stage	61.676
	SRR8316901	Third green stage	60.936
	SRR8316898	Complete white stage	30.817
	SRR8316899	Complete white stage	88.867
	SRR8316903	Complete white stage	50.951
	SRR8316902	Silver flowering stage	43.050
	SRR8316904	Silver flowering stage	56.851
	SRR8316905	Silver flowering stage	31.260
	SRR8316906	Gold flowering stage	95.531
	SRR8316907	Gold flowering stage	94.302
	SRR8316908	Gold flowering stage	104.632
SRP132670	SRR6706286	Control	70.929
	SRR6706287	Light intensity 50%	67.387
	SRR6706288	Light intensity 20%	66.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.771
	CNS0095593	Slightly white alabastrum(diploid) 2	41.289
	CNS0095594	Slightly white alabastrum(diploid) 3	35.163
	CNS0095595	Whole white alabastrum(diploid) 2	33.699
	CNS0095596	Whole white alabastrum(diploid) 3	30.028
	CNS0095597	Whole white alabastrum(diploid) 4	30.969
	CNS0095598	Silvery flower (diploied) 1	55.957
	CNS0095599	Silvery flower (diploied) 2	50.193
	CNS0095600	Silvery flower (diploied) 3	100.871
	CNS0095601	Golden flower (diploid) 1	54.740
	CNS0095602	Golden flower (diploid) 2	92.886
	CNS0095603	Golden flower (diploid) 3	88.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.122
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.516
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.426
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.714
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.436
	CNS0095610	Silvery flower (tetraploid) 1	83.992
	CNS0095611	Silvery flower (tetraploid) 2	92.098
	CNS0095612	Silvery flower (tetraploid) 3	151.937
	CNS0095613	Golden flower (tetraploid) 1	63.743
	CNS0095614	Golden flower (tetraploid) 2	70.924
	CNS0095615	Golden flower (tetraploid) 3	88.239
CRA001975	CRR073297	Stem 1	54.657
	CRR073298	Stem 2	52.410
	CRR073299	Stem 3	60.190
	CRR073300	Leaf 1	58.618
	CRR073301	Leaf 2	54.996
	CRR073302	Leaf 3	58.086
	CRR073303	Juvenile bud 1	65.530
	CRR073304	Juvenile bud 2	73.910
	CRR073305	Juvenile bud 3	78.426
	CRR073306	Third green 1	127.258
	CRR073307	Third green 2	104.213
	CRR073308	Third green 3	103.424
	CRR073309	Second white 1	203.673
	CRR073310	Second white 2	171.305
	CRR073311	Second white 3	174.326
	CRR073312	Silver flowering 1	156.474
	CRR073313	Silver flowering 2	142.148
	CRR073314	Silver flowering 3	120.955
	CRR073315	Gold flowering 1	38.640
	CRR073316	Gold flowering 2	42.572
	CRR073317	Gold flowering 3	43.114
	CRR073318	Tawny withering 1	36.103
	CRR073319	Tawny withering 2	46.423
	CRR073320	Tawny withering 3	40.572