Gene detail

Detail information of GWHGAAZE012927

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO64195.1	0	hypothetical protein CISIN_1g009095mg [Citrus sinensis]
Swissprot	tr\|Q8LPN7\|RNG1L_ARATH	2E-31	E3 ubiquitin-protein ligase RING1-like
trEMBL	tr\|A0A067FDM4\|A0A067FDM4_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO64195.1}
TAIR10	AT5G01980.1	3E-105	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93893940	93895532	-
GWHAAZE00000003	mRNA	93893940	93895532	-
GWHAAZE00000003	exon	93894866	93895532	-
GWHAAZE00000003	exon	93894244	93894835	-
GWHAAZE00000003	exon	93894053	93894192	-
GWHAAZE00000003	exon	93893940	93893998	-
GWHAAZE00000003	CDS	93894866	93895532	-
GWHAAZE00000003	CDS	93894244	93894835	-
GWHAAZE00000003	CDS	93894053	93894192	-
GWHAAZE00000003	CDS	93893940	93893998	-

Transcript Sequence
>GWHTAAZE012941 ATGGATGCAGCATGTGCTCTGTGCCAAAGAATCCTTTCATCTGATAATGAGGCAGGTGATCTTGAAGCTATCAGTATATGTGGTGACTGTAAATTTTTGTATCTAGAGGATATTGGGACCCCTATACACGATGTTCAAAGGAGGGCAACGAGAGTAAGAAGGGGAAGGAGAACGTACAGCAGCTCTGAGTCTGCGGAAAATATATTTTCCCAACAGTTCTCAAATATCATTAATTTGGCAAGGCAAAGCCAGCCTTCTATTTCTGAGCATGAGAGTCAATCTGTAGATGGAAATGCTACTGCTATGTTGGTGCAGCCCTCGAGTTCTTGGACTACTCCAAGTGGGTCGCGCCGATGGCGAAGGGTACTTTCAGACACCGAAAGTGATGGCTTTGATTCTCTTTATGGGGAGAGTGACTCAAATGTCAGCTTCAGTGGGTACAGGCTTTTTCATGGTGAGAATGATACAATTTCATTTAGCGCTTATGGAGGGGACTCTGATGCTTCTGTGGATGGTCATAGTTTAGTGGATAATGATATTTTTGGGCACCCAGATGCAGAAAGTGATCTTGATAGTGATTCTGATATTGACCCAATGCATGCCGGTCTTAGCCAATGGAACTCTGATGACCAAGAGGAAGAAGATGAAGATAATGAATGGGAAGAAGGAATGGTAGTTGACCTTCGAAGGTCATTGAATTCAACTGAAAGCAATGCCCCCAGGAATTGGCACAGACAGTTTCATACCCCTCACTTTGAGGGTACAATTCGTTTGGGAATCAGAGAACGGAGGAGACAAACTCGCATCCCTGACATATTTGCTAACTTGGCTGAATCAGAGTTACATGCTTATGCCGGAAATTCAGGCGACTATCTTGATGCTAGAGGCTTTGAGGAACTGCTTGAGAACCTAGCTGAGGGTGACAATTCAAGAAGAGGAGCCCCTCCTGCATCTGTCAGTTTTGTAAATTGTCTTCCGCGTGTGGTCATTAATGAGGAACATTGGAAGCAGGATAGTTTGGCATGTGCAGTCTGCAAGGATTTTTTATGTATTGGCACTGTTGTAAACCAGCTTCCATGTTTTCACGTTTATCACCCTTCCTGTATTTTGCCATGGTTAAGTGCTCGGAACTCGTGCCCTCTTTGTAGATATGAGCTTCCAACAGATGACAAGGAATACGAGGATGGTAAACATAGAAGTAGGAACAGAATGGAAGAAATTGAGCAGCAGGTAGTGAATGACGATAGTTTGTCAGAGACTAGAACAAGAGAGGAGCTTAATGTGGCTGGCGGTGGGGAGAATGGAAGAGGAAGATGGCTTTATCTTGCTGCTGCTCCTATTGTGAGCCTTGTGGGTATTGTTCTTGTCTTGTGGTTGGGGAATCCTCTAACAGAAAGACGTTTATGTCCTCATAATCCGAGGGAGAACCGGAGCAGGAGGTGGTGGTCTCTCTTTTAA

Network for GWHGAAZE012927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.7	zf-C3HC4_2	342	382	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.644
	SRR3591706	second leaf	12.112
	SRR3591707	mature leaf	15.589
	SRR3591708	Shoot apex	18.269
	SRR3591709	Stem	15.394
	SRR3591710	White floral bud	11.083
	SRR3591711	White flower	11.227
	SRR3591712	Green floral bud	10.951
	SRR3591713	Yellow flower	6.460
SRP173429	SRR8316895	Juvenile bud stage	6.387
	SRR8316896	Juvenile bud stage	8.969
	SRR8316897	Juvenile bud stage	4.594
	SRR8316894	Third green stage	4.659
	SRR8316900	Third green stage	9.583
	SRR8316901	Third green stage	9.347
	SRR8316898	Complete white stage	3.455
	SRR8316899	Complete white stage	13.993
	SRR8316903	Complete white stage	6.273
	SRR8316902	Silver flowering stage	1.646
	SRR8316904	Silver flowering stage	2.702
	SRR8316905	Silver flowering stage	1.995
	SRR8316906	Gold flowering stage	6.178
	SRR8316907	Gold flowering stage	5.322
	SRR8316908	Gold flowering stage	8.192
SRP132670	SRR6706286	Control	7.572
	SRR6706287	Light intensity 50%	7.294
	SRR6706288	Light intensity 20%	8.294
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.786
	CNS0095593	Slightly white alabastrum(diploid) 2	7.551
	CNS0095594	Slightly white alabastrum(diploid) 3	6.783
	CNS0095595	Whole white alabastrum(diploid) 2	6.751
	CNS0095596	Whole white alabastrum(diploid) 3	6.565
	CNS0095597	Whole white alabastrum(diploid) 4	5.595
	CNS0095598	Silvery flower (diploied) 1	10.151
	CNS0095599	Silvery flower (diploied) 2	6.897
	CNS0095600	Silvery flower (diploied) 3	8.105
	CNS0095601	Golden flower (diploid) 1	10.002
	CNS0095602	Golden flower (diploid) 2	10.952
	CNS0095603	Golden flower (diploid) 3	10.555
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.233
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.470
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.249
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.107
	CNS0095610	Silvery flower (tetraploid) 1	7.128
	CNS0095611	Silvery flower (tetraploid) 2	8.036
	CNS0095612	Silvery flower (tetraploid) 3	5.356
	CNS0095613	Golden flower (tetraploid) 1	4.935
	CNS0095614	Golden flower (tetraploid) 2	7.037
	CNS0095615	Golden flower (tetraploid) 3	5.825
CRA001975	CRR073297	Stem 1	13.391
	CRR073298	Stem 2	13.208
	CRR073299	Stem 3	13.999
	CRR073300	Leaf 1	11.702
	CRR073301	Leaf 2	10.704
	CRR073302	Leaf 3	9.947
	CRR073303	Juvenile bud 1	9.697
	CRR073304	Juvenile bud 2	6.988
	CRR073305	Juvenile bud 3	13.952
	CRR073306	Third green 1	3.223
	CRR073307	Third green 2	4.033
	CRR073308	Third green 3	4.102
	CRR073309	Second white 1	2.513
	CRR073310	Second white 2	2.277
	CRR073311	Second white 3	2.242
	CRR073312	Silver flowering 1	3.239
	CRR073313	Silver flowering 2	5.387
	CRR073314	Silver flowering 3	3.009
	CRR073315	Gold flowering 1	8.973
	CRR073316	Gold flowering 2	12.984
	CRR073317	Gold flowering 3	15.561
	CRR073318	Tawny withering 1	15.508
	CRR073319	Tawny withering 2	14.515
	CRR073320	Tawny withering 3	15.397