Gene detail

Detail information of GWHGAAZE012936

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265847.1	1.2783E-119	PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera]
Swissprot	tr\|P55871\|IF2B_MALDO	1E-108	Eukaryotic translation initiation factor 2 subunit beta
trEMBL	tr\|F6GU78\|F6GU78_VITVI	5E-120	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43394.1}
TAIR10	AT5G20920.3	1E-78	eukaryotic translation initiation factor 2 beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94004534	94006520	+
GWHAAZE00000003	mRNA	94004534	94006520	+
GWHAAZE00000003	exon	94004534	94004594	+
GWHAAZE00000003	exon	94004722	94004777	+
GWHAAZE00000003	exon	94005084	94005138	+
GWHAAZE00000003	exon	94005239	94005330	+
GWHAAZE00000003	exon	94005606	94005750	+
GWHAAZE00000003	exon	94005830	94006006	+
GWHAAZE00000003	exon	94006116	94006201	+
GWHAAZE00000003	exon	94006443	94006520	+
GWHAAZE00000003	CDS	94004534	94004594	+
GWHAAZE00000003	CDS	94004722	94004777	+
GWHAAZE00000003	CDS	94005084	94005138	+
GWHAAZE00000003	CDS	94005239	94005330	+
GWHAAZE00000003	CDS	94005606	94005750	+
GWHAAZE00000003	CDS	94005830	94006006	+
GWHAAZE00000003	CDS	94006116	94006201	+
GWHAAZE00000003	CDS	94006443	94006520	+

Transcript Sequence
>GWHTAAZE012950 GTTCAAGATCTTGAGGATAATTCTGCTGAACAGTTATCTAAGAAGACCGAAAACTTATCAATTTCTGAGGGAGTAGAAAATGCCTTCGTTGGCATGAGAAAGAAAAAGAAAAAACCTGTGGCAACTGATTCCTTGAATGACAGAAATTTTAACACAGGAGAGGATCTGGATGGTCCCAGTGGAGAGGGTGAAGATGGGGAAGGAAATCCCTCACGAACACGATACCCTTGGGAAGGAACCGATCGGGATTACATGTACGAGGAACTTCTAGGAAGAGTCTTCCATATTCTGAGGGAGAACAATCCAGAGCTTGCTGGAGACAGACGTAGGACAGTAATGAGGCCACCACAAGTTCTCGAGAAGGCACTAAGAAGACTGTCTTCGTCAACTTTATGGATTTGTGCAGAGCGTTATAGTTGCAACGCTTCAATTGACTTTTGCAGGATGCATAGGCAGCCAGACCATGTGATGACTTTCTTACTGGCTGAAATGGGGACAAGTGGTTCTCTTGATGGCCAACAGAGATTGGTTGTCAAAGGTAGATTTGCCCCTAAAAATTTTGAAGGGATTCTGCGTCGATACATCAATGAATATGTGATATGCAATGGCTGCAGAAGTCCAGATACAATTCTTTCAAAAGAGAATCGCCTGTTCTTTCTCAGATGTGAGCAGTGCGGTTCTGGGCGGTCTGTAGCTCCAATAAAGGCTGGTTTTGTTGCACGGGTTGGACGTCGCAAGGCTGGGTCATGA

Network for GWHGAAZE012936

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01873.18	eIF-5_eIF-2B	148	227	3.00E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03238	EIF2S2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.648
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.094
	SRR3591709	Stem	0.889
	SRR3591710	White floral bud	3.177
	SRR3591711	White flower	0.548
	SRR3591712	Green floral bud	130.934
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.660
	SRR8316896	Juvenile bud stage	14.785
	SRR8316897	Juvenile bud stage	17.348
	SRR8316894	Third green stage	15.090
	SRR8316900	Third green stage	104.615
	SRR8316901	Third green stage	122.574
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.693
	SRR8316903	Complete white stage	0.269
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.303
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	39.136
	SRR6706287	Light intensity 50%	34.119
	SRR6706288	Light intensity 20%	32.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.025
	CNS0095593	Slightly white alabastrum(diploid) 2	61.943
	CNS0095594	Slightly white alabastrum(diploid) 3	57.086
	CNS0095595	Whole white alabastrum(diploid) 2	118.228
	CNS0095596	Whole white alabastrum(diploid) 3	157.041
	CNS0095597	Whole white alabastrum(diploid) 4	111.221
	CNS0095598	Silvery flower (diploied) 1	0.114
	CNS0095599	Silvery flower (diploied) 2	0.765
	CNS0095600	Silvery flower (diploied) 3	0.078
	CNS0095601	Golden flower (diploid) 1	0.997
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.079
	CNS0095604	Slightly white alabastrum(tetraploid) 1	164.667
	CNS0095605	Slightly white alabastrum(tetraploid) 2	168.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	178.991
	CNS0095608	Whole white alabastrum(tetraploid) 2	133.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	90.182
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.185
	CNS0095612	Silvery flower (tetraploid) 3	0.440
	CNS0095613	Golden flower (tetraploid) 1	0.329
	CNS0095614	Golden flower (tetraploid) 2	0.488
	CNS0095615	Golden flower (tetraploid) 3	0.091
CRA001975	CRR073297	Stem 1	8.496
	CRR073298	Stem 2	16.075
	CRR073299	Stem 3	3.623
	CRR073300	Leaf 1	56.060
	CRR073301	Leaf 2	49.686
	CRR073302	Leaf 3	43.119
	CRR073303	Juvenile bud 1	21.220
	CRR073304	Juvenile bud 2	15.324
	CRR073305	Juvenile bud 3	0.199
	CRR073306	Third green 1	0.241
	CRR073307	Third green 2	0.511
	CRR073308	Third green 3	0.294
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.329
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.799
	CRR073314	Silver flowering 3	0.534
	CRR073315	Gold flowering 1	1.779
	CRR073316	Gold flowering 2	0.917
	CRR073317	Gold flowering 3	0.087
	CRR073318	Tawny withering 1	0.590
	CRR073319	Tawny withering 2	0.679
	CRR073320	Tawny withering 3	0.908