Gene detail

Detail information of GWHGAAZE012937

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273138.1	0	PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LZV4\|STN8_ARATH	0	Serine/threonine-protein kinase STN8, chloroplastic (Precursor)
trEMBL	tr\|A0A061EHS0\|A0A061EHS0_THECC	0	Kinase superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY04421.1}
TAIR10	AT5G01920.1	1E-165	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94007872	94010194	-
GWHAAZE00000003	mRNA	94007872	94010194	-
GWHAAZE00000003	exon	94007872	94008210	-
GWHAAZE00000003	exon	94008521	94008925	-
GWHAAZE00000003	exon	94009218	94009391	-
GWHAAZE00000003	exon	94009619	94010194	-
GWHAAZE00000003	CDS	94009619	94010194	-
GWHAAZE00000003	CDS	94009218	94009391	-
GWHAAZE00000003	CDS	94008521	94008925	-
GWHAAZE00000003	CDS	94007872	94008210	-

Transcript Sequence
>GWHTAAZE012951 ATGGCTTCCCTCATCTCCCCAACTGCAACTACTCCCAAATTCATTTGCTTCTCCCACCCTGCTTTAAGACCCAAATCCCAAAACCGTCTCTTCCCCTTCACCAACCCTTCCAAAACCAACAACCCATTCAGTTGCAATGCATTTCCTGATGATCTTTTACACACCACCCTTAATCTGAACCAATCTCTCCCTCTTTCCCCAATTCTCCAATCTGGTTATGCACAGTTTCAGACCCTTACTGGGGAATTGCCAGAGACAGAGAAATGGGGGATTTTGGTCTCTGCTGGGTTTGTTTGGATATACTTAACTGCCAGGCCTGGTGTTCTTATTGGTGCCATTGATGCTTATCTTTTAGCTCCTCTGCAGATGGTTATTGATACTTTGGCTGGCAAGAGGAGCTTGAAGAGGACTAGTTTCTTGGTTGGGGATAAATTGGGAGAAGGCTCTTTTGGTGTTGTTTATTCAGGCGTGGTTGTCCCCAAGAATGTCACTGCGGAGGAGAGAACCAGGAAGACAGGAAATAGAAGAGCATTGATGAAGGACTCTAGGTTTAAAGACAAGGTTATTCTTAAAAAGGTAAAACTTGGAGTCCAAGGTGCTGTAGAATGTGCTGAGTTTGAAGAGTGGTTTAATTACAGGTTGGCAAGAGCAGCTCCCGAGACATGCGCCAAGTTCCTTGGAAGTTTTGTTTCTGACACAACTAATTCACAATTTATTAAGGGTGAGAAATGGCTTGTCTGGAAATTTGAGGGAGATCTAGACCTTGCTGATTACATGAAAGATCGTAGCTTCCCTTTGAACTTAGAGTCGGCAATGTTTGGTCGTGTCTTACGAGCAGTGGACTCTATAGAGCGCAATGCATTAATTGTCAAACAAATAATGCGTCAGATTATAACATCACTCAAGAAGATCCACGACACAGGTATTGTCCACCGTGATGTAAAGCCATCCAACTTAGTGGTGACAAAGAAGGGACAGATCAAGCTCATAGATTTTGGTGCAGCAGCAGATCTTCGCATTGGCAAGAACTATGTACCCAAACGCGGACTTCTTGACCCTGACTATTGTCCCCCAGAACTATATGTAATGCCCGAGGAAACACCAAATCCACCACCGGAGCCAATTGCTGCTCTTTTTTCTCCTATTTTGTGGCAGCTAAACAGTCCCGATCTCTTTGATATGTATTCCGCGGGGATAGTACTGATGCAAATGGCTATACCAACCCTAAGATCAACAGCAGGCTTAAAGAATTTCAATCTAGAAATAAAGACGGTTGGTTATGACTTGAGAAAATGGAGGGAGAACACTCGGATGAGGCCTGACCTCAGTATTCTGGATCTTGATTCAGGTAGAGGCTGGGATTTGGCCACTAAACTTATTTCGGAGAGAGGTTTCCTTAGAAGGGGGCGTTTATCAGCTGCATCTGCTCTGCGCCATCCCTATTTCTTGTTGGGTGGGACCAAGCGGCCGCAGTTCTCTCTAAATTTAGCTTAA

Network for GWHGAAZE012937

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	283	482	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	Group-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.103
	SRR3591706	second leaf	28.077
	SRR3591707	mature leaf	34.999
	SRR3591708	Shoot apex	16.757
	SRR3591709	Stem	6.881
	SRR3591710	White floral bud	1.455
	SRR3591711	White flower	2.011
	SRR3591712	Green floral bud	1.435
	SRR3591713	Yellow flower	0.332
SRP173429	SRR8316895	Juvenile bud stage	5.228
	SRR8316896	Juvenile bud stage	4.986
	SRR8316897	Juvenile bud stage	4.133
	SRR8316894	Third green stage	2.414
	SRR8316900	Third green stage	5.034
	SRR8316901	Third green stage	4.561
	SRR8316898	Complete white stage	0.707
	SRR8316899	Complete white stage	4.708
	SRR8316903	Complete white stage	2.026
	SRR8316902	Silver flowering stage	0.869
	SRR8316904	Silver flowering stage	1.099
	SRR8316905	Silver flowering stage	0.354
	SRR8316906	Gold flowering stage	1.026
	SRR8316907	Gold flowering stage	1.826
	SRR8316908	Gold flowering stage	1.520
SRP132670	SRR6706286	Control	5.371
	SRR6706287	Light intensity 50%	4.270
	SRR6706288	Light intensity 20%	3.976
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.442
	CNS0095593	Slightly white alabastrum(diploid) 2	2.516
	CNS0095594	Slightly white alabastrum(diploid) 3	2.360
	CNS0095595	Whole white alabastrum(diploid) 2	1.913
	CNS0095596	Whole white alabastrum(diploid) 3	1.503
	CNS0095597	Whole white alabastrum(diploid) 4	1.645
	CNS0095598	Silvery flower (diploied) 1	6.739
	CNS0095599	Silvery flower (diploied) 2	7.016
	CNS0095600	Silvery flower (diploied) 3	3.714
	CNS0095601	Golden flower (diploid) 1	6.868
	CNS0095602	Golden flower (diploid) 2	4.190
	CNS0095603	Golden flower (diploid) 3	4.073
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.596
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.680
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.454
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.646
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.828
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.341
	CNS0095610	Silvery flower (tetraploid) 1	1.900
	CNS0095611	Silvery flower (tetraploid) 2	3.069
	CNS0095612	Silvery flower (tetraploid) 3	0.813
	CNS0095613	Golden flower (tetraploid) 1	0.931
	CNS0095614	Golden flower (tetraploid) 2	1.386
	CNS0095615	Golden flower (tetraploid) 3	0.030
CRA001975	CRR073297	Stem 1	11.050
	CRR073298	Stem 2	9.749
	CRR073299	Stem 3	12.520
	CRR073300	Leaf 1	5.008
	CRR073301	Leaf 2	4.825
	CRR073302	Leaf 3	3.879
	CRR073303	Juvenile bud 1	3.990
	CRR073304	Juvenile bud 2	1.805
	CRR073305	Juvenile bud 3	5.928
	CRR073306	Third green 1	0.323
	CRR073307	Third green 2	0.280
	CRR073308	Third green 3	0.109
	CRR073309	Second white 1	0.178
	CRR073310	Second white 2	0.391
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.226
	CRR073313	Silver flowering 2	0.057
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	60.305
	CRR073316	Gold flowering 2	74.538
	CRR073317	Gold flowering 3	66.831
	CRR073318	Tawny withering 1	6.106
	CRR073319	Tawny withering 2	5.289
	CRR073320	Tawny withering 3	5.265