Gene detail

Detail information of GWHGAAZE012967

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011095229.1	PREDICTED: F-box/LRR-repeat protein 3 [Sesamum indicum]
Swissprot	tr\|Q8RWU5\|FBL3_ARATH	F-box/LRR-repeat protein 3
trEMBL	tr\|A0A068VH70\|A0A068VH70_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_797 {ECO:0000313\|EMBL:CDP19947.1}
TAIR10	AT5G01720.1	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94505859	94510842	+
GWHAAZE00000003	mRNA	94505859	94510842	+
GWHAAZE00000003	exon	94505859	94506506	+
GWHAAZE00000003	exon	94507322	94507447	+
GWHAAZE00000003	exon	94507787	94507891	+
GWHAAZE00000003	exon	94508100	94508607	+
GWHAAZE00000003	exon	94508685	94508814	+
GWHAAZE00000003	exon	94509380	94509674	+
GWHAAZE00000003	exon	94509966	94510217	+
GWHAAZE00000003	exon	94510789	94510842	+
GWHAAZE00000003	CDS	94505859	94506506	+
GWHAAZE00000003	CDS	94507322	94507447	+
GWHAAZE00000003	CDS	94507787	94507891	+
GWHAAZE00000003	CDS	94508100	94508607	+
GWHAAZE00000003	CDS	94508685	94508814	+
GWHAAZE00000003	CDS	94509380	94509674	+
GWHAAZE00000003	CDS	94509966	94510217	+
GWHAAZE00000003	CDS	94510789	94510842	+

Transcript Sequence
>GWHTAAZE012981 ATGAAGAAGCAAAAACAATTCACTGAACCCAACAATACCAACTACTTCGATCTTCTCTCTGTAGAAATCGTATTCTCAATCCTCGATTTCCTCAATGACAACCCAATTGACAAAAAATCCTTCTCTTTGGTATGCAAATCATTCCACACAATCGAATCTCACCACCGTAAAACCCTAAAACCTCTTCGTTCTGAGCATTTAACCAAGATTCTAAATCGTTACCCGTATCTAACCCATCTTGATCTATCTCTATGTCCACGAATTACCGATGATTCCCTCACAGTTATATCGGCTGTTTGTAATAAAATGTTGAGGTCAATCGATTTGTCGAGATCCAAGTTCTTTACCCATTTGGGTTTGTCGAATTTGGCGATGAGTTGTTCAAATTTAGTTGAGATTGATTTGTCTAACGCGACCGAATTGAGAGATACTGCAGCTGCAGCGGTTGCAGAGGCCAAAAATTTAGAGAAGTTGTGGTTGAATAGGTGTAAATTGATTACGGATATGGGGATTGGGTGTATTGCTGTTGGGTGTAGGAAGTTGAAATTGATTAGCTTAAAATGGTGTTTGGGTATTGGTGATTTAGGGGTGGGGTTAATAGCTGTTAAGTGTAAGGAGATTCGGAGCTTGGATCTCTCTTATTTGTCGATCACAAAGAAATGCTTGCCACCAATCTTGAAACTAAAATATCTTGAAAATTTAATTCTAGAGGGATGCTTTGGTATTGACGATGACAACCTTTCAACCCTTAGACAAGGGTGCAAGTCGCTAGAGACACTTGATATGTCGAGTTGTCAGAATGTTAGTCACGTGGGGTTGTCTTCTCTGACAAGTGGCATTGAATCTCTTCGGCAACTTATCTTAGCATATGGCCCTCCGAAATTCTCCCCTCCTCCCAAATTAAGAGTGCTTTCTTTTTTTCATAACATAATCAACCTACGAAAACTCACGATAGGAAACATGTTTTGTTCTAAACCATTGATTCTGATGCAGGTCACTACTACTTTTGCTGACAGTTTGCAAAAGCTTGCAATGTTGCAATCGATCAAGTTAGATGGTTGTTTGGTTACATGTTCTGGGCTAAGGGCTATTGGTAACAGGTGCCAATCACTAATGGAGCTAAGCTTAAGCAAATGCGTGGGAGTGACAGATGAAGGTCTCTCCTCCATTGTGACAAAACACACGGACTTAAGGAAGCTAGACCTCACATGTTGTCGCAAAATAACTAAAACTTCGATTGCCCAAATCACAAACTCATGTACCTCTCTCAGTTCCCTTAGGATGGAGTCATGTACCTTGGTCCCAAGAGAAGCTTTTGTTTTGATTGGACAGCATTGCGGTTCTCTTGAAGATCTTGACCTTACGGATAACGAGATTGATGATGAAGGTTTGAAATCCATCTCAAGGTGTTCCAAGCTCTCCACCTTAAAGCTAGGAATTTGTCTGAATATAACCGACGAGGGGCTTACTCATATTGGCATGTGCTGCTCAAAACTTGTAGAACTCGATTTATACAGGTCTGCAGGAATAACGGATTCGGGTATTTTAGCGATTGCTCAAGGCTGCAGTGGCCTTGAAATGATCAACATATCCTATTGTACAGATATTACAGACAAGTCCTTATTATCATTGTCAAAATGTCAAAAGATGAACACACTTGAAAGCCGAGGTTGCCCTCTTATCACTTCTTTAGGTCTAGCAGCCATTGCTGTTGGATGCAAGTTACTATCCAAGCTAGACATCAAAAAGTGCTACAACATAAATGATGCTGGAATGATCCCACTTGCTCATTTTTCTCAAAACCTCAGACAGATAAATTTGTCATATAGTTCGGTGACAGACGTTGGGGTCTTGTCACTTGCCAACGTCACCTGCCTACAGAGTCTGACGATGCTTCACGTCAGGGGTTTGACAACAGGTGGATTGGCGGCATCTCTGTTGGCTTGTTCTGGACTAACAAAAGTGAAGCTCCAAGCATCCTTTAAATCATTGCTACCTCGACTTCTTTTCGAACATTTAGAATCCCGTGGCTGTGTTTTTCTATGGAGAGATAAAGCGTTTCAGGCTGAGTTAGACCCAAAGTGTTGGAAACTAAAGTTGGAAGATGTTGATGAATAG

Network for GWHGAAZE012967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.7	LRR_6	76	96	0.11
PF13516.7	LRR_6	254	276	0.59
PF13516.7	LRR_6	368	390	0.063
PF13516.7	LRR_6	448	468	0.00023
PF13516.7	LRR_6	599	621	0.61

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.687
	SRR3591706	second leaf	4.817
	SRR3591707	mature leaf	12.496
	SRR3591708	Shoot apex	5.758
	SRR3591709	Stem	12.461
	SRR3591710	White floral bud	14.395
	SRR3591711	White flower	24.777
	SRR3591712	Green floral bud	9.971
	SRR3591713	Yellow flower	15.417
SRP173429	SRR8316895	Juvenile bud stage	5.719
	SRR8316896	Juvenile bud stage	9.704
	SRR8316897	Juvenile bud stage	3.890
	SRR8316894	Third green stage	5.289
	SRR8316900	Third green stage	11.320
	SRR8316901	Third green stage	11.668
	SRR8316898	Complete white stage	4.520
	SRR8316899	Complete white stage	15.159
	SRR8316903	Complete white stage	9.387
	SRR8316902	Silver flowering stage	13.459
	SRR8316904	Silver flowering stage	18.893
	SRR8316905	Silver flowering stage	7.691
	SRR8316906	Gold flowering stage	38.618
	SRR8316907	Gold flowering stage	23.859
	SRR8316908	Gold flowering stage	35.629
SRP132670	SRR6706286	Control	6.767
	SRR6706287	Light intensity 50%	6.494
	SRR6706288	Light intensity 20%	6.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.648
	CNS0095593	Slightly white alabastrum(diploid) 2	6.113
	CNS0095594	Slightly white alabastrum(diploid) 3	6.340
	CNS0095595	Whole white alabastrum(diploid) 2	4.817
	CNS0095596	Whole white alabastrum(diploid) 3	4.635
	CNS0095597	Whole white alabastrum(diploid) 4	6.161
	CNS0095598	Silvery flower (diploied) 1	8.575
	CNS0095599	Silvery flower (diploied) 2	9.015
	CNS0095600	Silvery flower (diploied) 3	26.297
	CNS0095601	Golden flower (diploid) 1	12.574
	CNS0095602	Golden flower (diploid) 2	30.168
	CNS0095603	Golden flower (diploid) 3	30.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.043
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.398
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.046
	CNS0095610	Silvery flower (tetraploid) 1	15.580
	CNS0095611	Silvery flower (tetraploid) 2	23.057
	CNS0095612	Silvery flower (tetraploid) 3	9.586
	CNS0095613	Golden flower (tetraploid) 1	15.721
	CNS0095614	Golden flower (tetraploid) 2	18.553
	CNS0095615	Golden flower (tetraploid) 3	30.917
CRA001975	CRR073297	Stem 1	9.832
	CRR073298	Stem 2	7.387
	CRR073299	Stem 3	5.741
	CRR073300	Leaf 1	7.113
	CRR073301	Leaf 2	7.189
	CRR073302	Leaf 3	6.347
	CRR073303	Juvenile bud 1	8.473
	CRR073304	Juvenile bud 2	3.866
	CRR073305	Juvenile bud 3	7.762
	CRR073306	Third green 1	2.351
	CRR073307	Third green 2	1.595
	CRR073308	Third green 3	1.761
	CRR073309	Second white 1	4.149
	CRR073310	Second white 2	3.646
	CRR073311	Second white 3	4.022
	CRR073312	Silver flowering 1	3.794
	CRR073313	Silver flowering 2	3.274
	CRR073314	Silver flowering 3	4.086
	CRR073315	Gold flowering 1	4.420
	CRR073316	Gold flowering 2	7.298
	CRR073317	Gold flowering 3	4.547
	CRR073318	Tawny withering 1	6.181
	CRR073319	Tawny withering 2	5.708
	CRR073320	Tawny withering 3	5.905