Detail information of GWHGAAZE012980


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU41945.17.168E-158hypothetical protein MIMGU_mgv1a012043mg [Erythranthe guttata]
Swissprottr|P46300|RS4_SOLTU6E-15740S ribosomal protein S4
trEMBLtr|A0A022RSS0|A0A022RSS0_ERYGU3E-15840S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}
TAIR10AT2G17360.15E-110Ribosomal protein S4 (RPS4A) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9473648994739179-
GWHAAZE00000003mRNA9473648994739179-
GWHAAZE00000003exon9473648994736923-
GWHAAZE00000003exon9473741894737515-
GWHAAZE00000003exon9473762694737635-
GWHAAZE00000003exon9473815794738255-
GWHAAZE00000003exon9473838394738460-
GWHAAZE00000003exon9473917794739179-
GWHAAZE00000003CDS9473917794739179-
GWHAAZE00000003CDS9473838394738460-
GWHAAZE00000003CDS9473815794738255-
GWHAAZE00000003CDS9473762694737635-
GWHAAZE00000003CDS9473741894737515-
GWHAAZE00000003CDS9473648994736923-
Transcript Sequence

Network for GWHGAAZE012980

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08071.13RS4NT3393.60E-19
PF00900.21Ribosomal_S4e711457.40E-36
PF00467.30KOW1531862.90E-06
PF16121.640S_S4_C1882341.10E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02987RP-S4e, RPS4 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf827.617
SRR3591706second leaf278.785
SRR3591707mature leaf146.740
SRR3591708Shoot apex921.805
SRR3591709Stem434.977
SRR3591710White floral bud263.624
SRR3591711White flower360.422
SRR3591712Green floral bud671.941
SRR3591713Yellow flower265.215
SRP173429 SRR8316895Juvenile bud stage 335.846
SRR8316896Juvenile bud stage 468.285
SRR8316897Juvenile bud stage 235.731
SRR8316894Third green stage 203.188
SRR8316900Third green stage 676.652
SRR8316901Third green stage 591.403
SRR8316898Complete white stage 94.809
SRR8316899Complete white stage 521.524
SRR8316903Complete white stage 142.234
SRR8316902Silver flowering stage86.627
SRR8316904Silver flowering stage94.880
SRR8316905Silver flowering stage41.945
SRR8316906Gold flowering stage 154.424
SRR8316907Gold flowering stage 153.567
SRR8316908Gold flowering stage 210.947
SRP132670SRR6706286Control593.637
SRR6706287Light intensity 50%630.671
SRR6706288Light intensity 20%699.039
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1497.288
CNS0095593Slightly white alabastrum(diploid) 2559.644
CNS0095594Slightly white alabastrum(diploid) 3489.117
CNS0095595Whole white alabastrum(diploid) 2415.222
CNS0095596Whole white alabastrum(diploid) 3495.194
CNS0095597Whole white alabastrum(diploid) 4326.594
CNS0095598Silvery flower (diploied) 1246.518
CNS0095599Silvery flower (diploied) 2218.179
CNS0095600Silvery flower (diploied) 3184.882
CNS0095601Golden flower (diploid) 1182.278
CNS0095602Golden flower (diploid) 2183.157
CNS0095603Golden flower (diploid) 3175.062
CNS0095604Slightly white alabastrum(tetraploid) 1480.201
CNS0095605Slightly white alabastrum(tetraploid) 2470.611
CNS0095606Slightly white alabastrum(tetraploid) 3610.015
CNS0095607Whole white alabastrum(tetraploid) 1231.865
CNS0095608Whole white alabastrum(tetraploid) 2208.876
CNS0095609Whole white alabastrum(tetraploid) 3482.716
CNS0095610Silvery flower (tetraploid) 1190.927
CNS0095611Silvery flower (tetraploid) 2159.158
CNS0095612Silvery flower (tetraploid) 398.214
CNS0095613Golden flower (tetraploid) 194.872
CNS0095614Golden flower (tetraploid) 2164.293
CNS0095615Golden flower (tetraploid) 373.625
CRA001975CRR073297Stem 1591.037
CRR073298Stem 2619.412
CRR073299Stem 3690.637
CRR073300Leaf 1611.862
CRR073301Leaf 2680.773
CRR073302Leaf 3830.293
CRR073303Juvenile bud 1665.832
CRR073304Juvenile bud 2493.039
CRR073305Juvenile bud 3666.802
CRR073306Third green 151.406
CRR073307Third green 255.039
CRR073308Third green 362.980
CRR073309Second white 184.865
CRR073310Second white 257.592
CRR073311Second white 343.640
CRR073312Silver flowering 172.150
CRR073313Silver flowering 2113.625
CRR073314Silver flowering 378.747
CRR073315Gold flowering 1246.173
CRR073316Gold flowering 2297.044
CRR073317Gold flowering 3286.211
CRR073318Tawny withering 1635.916
CRR073319Tawny withering 2479.146
CRR073320Tawny withering 3647.397