Detail information of GWHGAAZE012988


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007026634.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [Theobroma cacao]
Swissprottr|Q9M040|PDC4_ARATH0Pyruvate decarboxylase 4
trEMBLtr|A0A061EQM3|A0A061EQM3_THECC0Thiamine pyrophosphate dependent pyruvate decarboxylase family protein {ECO:0000313|EMBL:EOY07136.1}
TAIR10AT5G01320.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9487382394879325-
GWHAAZE00000003mRNA9487382394879325-
GWHAAZE00000003exon9487382394873993-
GWHAAZE00000003exon9487407894874266-
GWHAAZE00000003exon9487532294875511-
GWHAAZE00000003exon9487571494876364-
GWHAAZE00000003exon9487667994876842-
GWHAAZE00000003exon9487808394878507-
GWHAAZE00000003exon9487922394879325-
GWHAAZE00000003CDS9487922394879325-
GWHAAZE00000003CDS9487808394878507-
GWHAAZE00000003CDS9487667994876842-
GWHAAZE00000003CDS9487571494876364-
GWHAAZE00000003CDS9487532294875511-
GWHAAZE00000003CDS9487407894874266-
GWHAAZE00000003CDS9487382394873993-
Transcript Sequence

Network for GWHGAAZE012988

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02776.19TPP_enzyme_N452138.50E-35
PF00205.23TPP_enzyme_M2423574.70E-22
PF02775.22TPP_enzyme_C4776001.60E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01568PDC, pdc Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycolysis / Gluconeogenesismap00010

Gene Ontology

GO term OntologyName
GO:0030976molecular_functionthiamine pyrophosphate binding
GO:0016831molecular_functioncarboxy-lyase activity
GO:0000287molecular_functionmagnesium ion binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf113.191
SRR3591706second leaf125.064
SRR3591707mature leaf284.384
SRR3591708Shoot apex55.629
SRR3591709Stem73.613
SRR3591710White floral bud193.750
SRR3591711White flower215.449
SRR3591712Green floral bud229.694
SRR3591713Yellow flower170.975
SRP173429 SRR8316895Juvenile bud stage 46.548
SRR8316896Juvenile bud stage 63.949
SRR8316897Juvenile bud stage 33.271
SRR8316894Third green stage 27.790
SRR8316900Third green stage 66.014
SRR8316901Third green stage 84.272
SRR8316898Complete white stage 47.364
SRR8316899Complete white stage 172.885
SRR8316903Complete white stage 80.095
SRR8316902Silver flowering stage105.289
SRR8316904Silver flowering stage137.192
SRR8316905Silver flowering stage86.581
SRR8316906Gold flowering stage 263.979
SRR8316907Gold flowering stage 205.646
SRR8316908Gold flowering stage 249.217
SRP132670SRR6706286Control106.197
SRR6706287Light intensity 50%107.004
SRR6706288Light intensity 20%113.559
CNP0000432CNS0095592Slightly white alabastrum(diploid) 154.163
CNS0095593Slightly white alabastrum(diploid) 259.414
CNS0095594Slightly white alabastrum(diploid) 355.846
CNS0095595Whole white alabastrum(diploid) 250.769
CNS0095596Whole white alabastrum(diploid) 335.970
CNS0095597Whole white alabastrum(diploid) 445.957
CNS0095598Silvery flower (diploied) 174.766
CNS0095599Silvery flower (diploied) 287.761
CNS0095600Silvery flower (diploied) 3143.959
CNS0095601Golden flower (diploid) 168.954
CNS0095602Golden flower (diploid) 2110.268
CNS0095603Golden flower (diploid) 3104.973
CNS0095604Slightly white alabastrum(tetraploid) 1116.559
CNS0095605Slightly white alabastrum(tetraploid) 290.037
CNS0095606Slightly white alabastrum(tetraploid) 3258.359
CNS0095607Whole white alabastrum(tetraploid) 183.760
CNS0095608Whole white alabastrum(tetraploid) 261.724
CNS0095609Whole white alabastrum(tetraploid) 3169.388
CNS0095610Silvery flower (tetraploid) 1153.967
CNS0095611Silvery flower (tetraploid) 292.701
CNS0095612Silvery flower (tetraploid) 340.033
CNS0095613Golden flower (tetraploid) 170.845
CNS0095614Golden flower (tetraploid) 2143.023
CNS0095615Golden flower (tetraploid) 358.225
CRA001975CRR073297Stem 155.479
CRR073298Stem 256.568
CRR073299Stem 367.429
CRR073300Leaf 1102.142
CRR073301Leaf 286.540
CRR073302Leaf 394.313
CRR073303Juvenile bud 1130.062
CRR073304Juvenile bud 2130.882
CRR073305Juvenile bud 3194.993
CRR073306Third green 1182.749
CRR073307Third green 2204.162
CRR073308Third green 3194.069
CRR073309Second white 1131.464
CRR073310Second white 2119.255
CRR073311Second white 391.573
CRR073312Silver flowering 189.615
CRR073313Silver flowering 2113.901
CRR073314Silver flowering 390.189
CRR073315Gold flowering 1133.360
CRR073316Gold flowering 2124.023
CRR073317Gold flowering 3137.972
CRR073318Tawny withering 161.273
CRR073319Tawny withering 254.154
CRR073320Tawny withering 358.307