Detail information of GWHGAAZE012995


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008243417.10PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
Swissprottr|Q38833|CHLG_ARATH0Chlorophyll synthase, chloroplastic (Precursor)
trEMBLtr|A0A061ES34|A0A061ES34_THECC0UbiA prenyltransferase family protein isoform 2 {ECO:0000313|EMBL:EOY07152.1}
TAIR10AT3G51820.15E-152UbiA prenyltransferase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9498487394990936-
GWHAAZE00000003mRNA9498487394990936-
GWHAAZE00000003exon9499086494990936-
GWHAAZE00000003exon9499067394990761-
GWHAAZE00000003exon9499002094990107-
GWHAAZE00000003exon9498923194989316-
GWHAAZE00000003exon9498904894989134-
GWHAAZE00000003exon9498863794988706-
GWHAAZE00000003exon9498847694988555-
GWHAAZE00000003exon9498831594988376-
GWHAAZE00000003exon9498704794987122-
GWHAAZE00000003exon9498689194986953-
GWHAAZE00000003exon9498669394986774-
GWHAAZE00000003exon9498598494986060-
GWHAAZE00000003exon9498547994985526-
GWHAAZE00000003exon9498487394985268-
GWHAAZE00000003CDS9499086494990936-
GWHAAZE00000003CDS9499067394990761-
GWHAAZE00000003CDS9499002094990107-
GWHAAZE00000003CDS9498923194989316-
GWHAAZE00000003CDS9498904894989134-
GWHAAZE00000003CDS9498863794988706-
GWHAAZE00000003CDS9498847694988555-
GWHAAZE00000003CDS9498831594988376-
GWHAAZE00000003CDS9498704794987122-
GWHAAZE00000003CDS9498689194986953-
GWHAAZE00000003CDS9498669394986774-
GWHAAZE00000003CDS9498598494986060-
GWHAAZE00000003CDS9498547994985526-
GWHAAZE00000003CDS9498520694985268-
GWHAAZE00000003three_prime_UTR9498487394985205-
Transcript Sequence

Network for GWHGAAZE012995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01040.19UbiA703161.20E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04040chlG, bchG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0015995biological_processchlorophyll biosynthetic process
GO:0016021cellular_componentintegral component of membrane
GO:0046408molecular_functionchlorophyll synthetase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.499
SRR3591706second leaf64.854
SRR3591707mature leaf49.087
SRR3591708Shoot apex54.460
SRR3591709Stem15.321
SRR3591710White floral bud16.594
SRR3591711White flower9.993
SRR3591712Green floral bud35.636
SRR3591713Yellow flower6.125
SRP173429 SRR8316895Juvenile bud stage 24.150
SRR8316896Juvenile bud stage 33.073
SRR8316897Juvenile bud stage 20.328
SRR8316894Third green stage 18.981
SRR8316900Third green stage 68.989
SRR8316901Third green stage 52.340
SRR8316898Complete white stage 13.863
SRR8316899Complete white stage 54.685
SRR8316903Complete white stage 17.413
SRR8316902Silver flowering stage10.154
SRR8316904Silver flowering stage9.076
SRR8316905Silver flowering stage5.356
SRR8316906Gold flowering stage 14.130
SRR8316907Gold flowering stage 17.936
SRR8316908Gold flowering stage 18.830
SRP132670SRR6706286Control27.034
SRR6706287Light intensity 50%30.468
SRR6706288Light intensity 20%38.236
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.389
CNS0095593Slightly white alabastrum(diploid) 224.647
CNS0095594Slightly white alabastrum(diploid) 319.264
CNS0095595Whole white alabastrum(diploid) 220.509
CNS0095596Whole white alabastrum(diploid) 324.938
CNS0095597Whole white alabastrum(diploid) 417.188
CNS0095598Silvery flower (diploied) 130.720
CNS0095599Silvery flower (diploied) 224.934
CNS0095600Silvery flower (diploied) 320.522
CNS0095601Golden flower (diploid) 119.141
CNS0095602Golden flower (diploid) 217.411
CNS0095603Golden flower (diploid) 315.104
CNS0095604Slightly white alabastrum(tetraploid) 127.796
CNS0095605Slightly white alabastrum(tetraploid) 225.779
CNS0095606Slightly white alabastrum(tetraploid) 343.608
CNS0095607Whole white alabastrum(tetraploid) 113.676
CNS0095608Whole white alabastrum(tetraploid) 216.812
CNS0095609Whole white alabastrum(tetraploid) 339.742
CNS0095610Silvery flower (tetraploid) 116.492
CNS0095611Silvery flower (tetraploid) 222.875
CNS0095612Silvery flower (tetraploid) 316.813
CNS0095613Golden flower (tetraploid) 17.060
CNS0095614Golden flower (tetraploid) 210.047
CNS0095615Golden flower (tetraploid) 34.237
CRA001975CRR073297Stem 131.578
CRR073298Stem 230.101
CRR073299Stem 333.317
CRR073300Leaf 140.393
CRR073301Leaf 236.955
CRR073302Leaf 344.783
CRR073303Juvenile bud 144.445
CRR073304Juvenile bud 227.920
CRR073305Juvenile bud 339.005
CRR073306Third green 113.615
CRR073307Third green 25.210
CRR073308Third green 38.288
CRR073309Second white 14.716
CRR073310Second white 24.999
CRR073311Second white 33.145
CRR073312Silver flowering 14.583
CRR073313Silver flowering 23.374
CRR073314Silver flowering 34.907
CRR073315Gold flowering 176.539
CRR073316Gold flowering 288.744
CRR073317Gold flowering 359.723
CRR073318Tawny withering 113.318
CRR073319Tawny withering 210.860
CRR073320Tawny withering 312.483