Gene detail

Detail information of GWHGAAZE012996

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008243425.1	PREDICTED: AMP deaminase [Prunus mume]
Swissprot	tr\|O80452\|AMPD_ARATH	AMP deaminase
trEMBL	tr\|M5WJ78\|M5WJ78_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09288.1}
TAIR10	AT2G38280.2	AMP deaminase, putative / myoadenylate deaminase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95012513	95023398	+
GWHAAZE00000003	mRNA	95012513	95023398	+
GWHAAZE00000003	exon	95012513	95012896	+
GWHAAZE00000003	exon	95015033	95015214	+
GWHAAZE00000003	exon	95015631	95015811	+
GWHAAZE00000003	exon	95016452	95016630	+
GWHAAZE00000003	exon	95016762	95016813	+
GWHAAZE00000003	exon	95016922	95017346	+
GWHAAZE00000003	exon	95017606	95017673	+
GWHAAZE00000003	exon	95017802	95017944	+
GWHAAZE00000003	exon	95018132	95018193	+
GWHAAZE00000003	exon	95018504	95018617	+
GWHAAZE00000003	exon	95020024	95020164	+
GWHAAZE00000003	exon	95021197	95021349	+
GWHAAZE00000003	exon	95021723	95021776	+
GWHAAZE00000003	exon	95021860	95021970	+
GWHAAZE00000003	exon	95022354	95022527	+
GWHAAZE00000003	exon	95022620	95022700	+
GWHAAZE00000003	exon	95023123	95023221	+
GWHAAZE00000003	exon	95023330	95023398	+
GWHAAZE00000003	five_prime_UTR	95012513	95012526	+
GWHAAZE00000003	CDS	95012527	95012896	+
GWHAAZE00000003	CDS	95015033	95015214	+
GWHAAZE00000003	CDS	95015631	95015811	+
GWHAAZE00000003	CDS	95016452	95016630	+
GWHAAZE00000003	CDS	95016762	95016813	+
GWHAAZE00000003	CDS	95016922	95017346	+
GWHAAZE00000003	CDS	95017606	95017673	+
GWHAAZE00000003	CDS	95017802	95017944	+
GWHAAZE00000003	CDS	95018132	95018193	+
GWHAAZE00000003	CDS	95018504	95018617	+
GWHAAZE00000003	CDS	95020024	95020164	+
GWHAAZE00000003	CDS	95021197	95021349	+
GWHAAZE00000003	CDS	95021723	95021776	+
GWHAAZE00000003	CDS	95021860	95021970	+
GWHAAZE00000003	CDS	95022354	95022527	+
GWHAAZE00000003	CDS	95022620	95022700	+
GWHAAZE00000003	CDS	95023123	95023221	+
GWHAAZE00000003	CDS	95023330	95023398	+

Transcript Sequence
>GWHTAAZE013010 GCTTTTCAACAGCCATGGATGCACACGCTCTGCATCTAGCCATGGCGGCACTAATCGGAGCTTCATTTGTAGCCGTATCAGCCTATTACATGCACCGTAAAACCCTAACACAGTTGCTGGAGTTCGCCAAGACCATGGATAGAGAACGAGAGAGGGAAGATGGCGATGGAGAGGGGGATAAATCGCCTCAGCATTTTAAGAAGCGGAGGAATTATGGACGGAGGAAGGGGAGTGGAAGCTACCGCCGCTTGTCCGCGTCGTTTCCTGATGTCACGGCGGTTTCCGTCGCTGGCGGTGGTGATTGCGAGGAGAGGCTGAACAATGGTACTGTCTATGCTGATGTCATTCCGCCGGGGCTGCCCAGGCTACACACGCTTCCTGAAGGGAAATCTGGTGGCCATGCTGCTACACCCAAGAGAGTGGGACATCTAATCAGACCCACTTCTCCCAAGTCTCCTGTTGCTAGTGCTAGTGCATTTGAAAGTGTAGAAGGATCAGACGATGAGGATAATATGACGGACAATGCAGATTTGGAGACGATGTATATCCACACTAACGGAAATGCTAATTTACCGGAACAAATTAATGCCAATGGAGAACAAATTGCTATAGCTCCATCTAGCATGATTCGGTCCCATAGTGTATCCGGTGACCTGCATGGTGTTCAACCTGATCCTGTAGCAGCTGACATTCTAAGGAAAGAGCCAGAGCATGAAACTTTTGTACGACTCAAAATTTCCCCAACTGAGATGCCATCACCCGATGAAGCAGAGGTCTACTGCACTATGCAAGTTTGCCTTGAAATGCGACAAAGTTATGTCTTTAAGGAAGCTGTTGCTCCTTGGGAGAAAGAAGTCATATCTGATCCTTGTACACCGAAGCCTAATCCTAATCCATTTGCTTATACTCCTGTTGGAAAATCTGAACATCATTTTCAGATGGAAGATGGAGTTGTTCATGTTTACACAAATAAAGATTCCCAAGAAAAGCTTTTCCCTGTTGCTGATGCGACGACCTTTTTCACTGACCTGCATTACATCCTTAAAGTAATAGCGGCTGGGAATACACGAACATTGTGTCATCATCGACTAAACCTCCTTGAACAAGTAGATTATTTTCCCCTGATTTTTTTTCTGCAGGGTCTTGTATTTTTTTGCTTGGAATTTTTTTTTGAGAAATCTCACTCTGATGCTTCACGTAATGCTTTATTGAACATTATTCAGAAATTCAATCTTCATTTGATGCTTAATGCGGATAGAGAATTTCTAGCTCAAAAGAGTGCTCCACACCGTGACTTTTATAATGTGAGGAAAGTTGACACACATGTTCATCACTCAGCATGCATGAATCAGAAACATCTTTTGAGATTCATAAAGTCAAAGCTGAGAAAGGAGCCTGATGAGGTTGTAATATTTCGAGACGGTACATATCTGACCTTGAAAGAGGTTTTTGAGAGCTTGGATTTAACTGGGTATGACCTGAATGTTGACCTTTTAGACGTTCATGCTGACAAGAGCACTTTTCATCGATTTGACAAGTTCAACCTCAAGTATAATCCATGTGGTCAAAGTCGGCTCAGGGAGATCTTCTTGAAGCAAGATAATCTTATCCAGGGTCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCAGATCTCGATACAAGTAAATATCAAATGGCTGAATACAGAATATCAATATACGGTAGAAAGCAAAGCGAGTGGGACCAACTGGCAAGTTGGATAGTTAATAATGAATTGTACAGCGAGAATGTTGTTTGGTTGATTCAGCTTCCTCGGTTGTACAATATTTACAAGGAAATGGGGATTGTTACATCATTTCAGAACATTCTTGATAATATCTTTCTTCCTCTGTTTGAAGTAACCATTGATCCAGAATCACACCCTCAGTTGCATGTTTTCTTGAAGAAGGTGGTTGGGTTGGATTTGGTGGATGATGAAAGCAAGCCTGAAAGACGACCTACAAAACACATGCCGACACCAGCCCAATGGACCAATATATTCAACCCTGCATTTTCCTATTATGCATACTATTGTTATGCTAACCTTTATACGCTAAACAAGCTCCGCGAGTCAAAGGGAATGACTACTATCAAATTCCGCCCACATTCTGGAGAGGCCGGTGACATTGACCACCTTGCTGCAACATTTCTTACTGCTCATAATATTGCACATGGAATCAATTTGAGAAAATCTCCTGTACTCCAGTATTTGTACTACCTGGCCCAGATTGGTCTGGCCATGTCTCCTCTAAGCAACAACTCCTTATTTTTAGACTACCACAGGAATCCATTTCCCATCTTTTTCCTACGAGGCCTAAATGTTTCCCTTTCTACTGACGACCCATTACAAATCCACCTAACAAAAGAGCCATTGGTGGAAGAATACAGTATAGCTGCATCTGTTTGGAAGTTAAGTTCGTGTGATCTATGTGAGATTGCCCGTAACTCTGTCTACCAATCAGGTTTCTCACATGCTCTGAAGTCTCACTGGATTGGGAGGGGGTACTACAAGAGAGGACCAGATGGAAATGATATTCACAGGACCAATGTGCCTCATATACGGCTAGAATTCCGTGATACGATATGGAGAGAGGAGATGCAACAGGTTTACCTTGGCAAAGCCCTTTTTCCTGAAGACATTGGCACATAA

Network for GWHGAAZE012996

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00962.23	A_deaminase	430	835	8.00E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01490	AMPD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0032264	biological_process	IMP salvage
GO:0009168	biological_process	purine ribonucleoside monophosphate biosynthetic process
GO:0003876	molecular_function	AMP deaminase activity
GO:0019239	molecular_function	deaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.670
	SRR3591706	second leaf	9.354
	SRR3591707	mature leaf	14.480
	SRR3591708	Shoot apex	13.178
	SRR3591709	Stem	10.953
	SRR3591710	White floral bud	15.704
	SRR3591711	White flower	15.139
	SRR3591712	Green floral bud	15.134
	SRR3591713	Yellow flower	5.319
SRP173429	SRR8316895	Juvenile bud stage	8.441
	SRR8316896	Juvenile bud stage	9.891
	SRR8316897	Juvenile bud stage	4.144
	SRR8316894	Third green stage	4.701
	SRR8316900	Third green stage	12.449
	SRR8316901	Third green stage	10.841
	SRR8316898	Complete white stage	1.089
	SRR8316899	Complete white stage	10.732
	SRR8316903	Complete white stage	4.356
	SRR8316902	Silver flowering stage	1.214
	SRR8316904	Silver flowering stage	3.056
	SRR8316905	Silver flowering stage	1.936
	SRR8316906	Gold flowering stage	1.570
	SRR8316907	Gold flowering stage	1.362
	SRR8316908	Gold flowering stage	1.653
SRP132670	SRR6706286	Control	12.962
	SRR6706287	Light intensity 50%	13.400
	SRR6706288	Light intensity 20%	14.658
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.585
	CNS0095593	Slightly white alabastrum(diploid) 2	6.457
	CNS0095594	Slightly white alabastrum(diploid) 3	6.450
	CNS0095595	Whole white alabastrum(diploid) 2	6.096
	CNS0095596	Whole white alabastrum(diploid) 3	5.219
	CNS0095597	Whole white alabastrum(diploid) 4	5.270
	CNS0095598	Silvery flower (diploied) 1	15.828
	CNS0095599	Silvery flower (diploied) 2	6.252
	CNS0095600	Silvery flower (diploied) 3	4.152
	CNS0095601	Golden flower (diploid) 1	7.380
	CNS0095602	Golden flower (diploid) 2	4.292
	CNS0095603	Golden flower (diploid) 3	4.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.642
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.317
	CNS0095610	Silvery flower (tetraploid) 1	3.514
	CNS0095611	Silvery flower (tetraploid) 2	4.514
	CNS0095612	Silvery flower (tetraploid) 3	3.227
	CNS0095613	Golden flower (tetraploid) 1	2.165
	CNS0095614	Golden flower (tetraploid) 2	1.952
	CNS0095615	Golden flower (tetraploid) 3	1.040
CRA001975	CRR073297	Stem 1	9.697
	CRR073298	Stem 2	9.553
	CRR073299	Stem 3	7.443
	CRR073300	Leaf 1	10.479
	CRR073301	Leaf 2	8.733
	CRR073302	Leaf 3	6.852
	CRR073303	Juvenile bud 1	6.530
	CRR073304	Juvenile bud 2	3.142
	CRR073305	Juvenile bud 3	9.758
	CRR073306	Third green 1	0.815
	CRR073307	Third green 2	0.450
	CRR073308	Third green 3	0.787
	CRR073309	Second white 1	0.185
	CRR073310	Second white 2	0.133
	CRR073311	Second white 3	0.114
	CRR073312	Silver flowering 1	0.023
	CRR073313	Silver flowering 2	0.149
	CRR073314	Silver flowering 3	0.022
	CRR073315	Gold flowering 1	4.511
	CRR073316	Gold flowering 2	9.260
	CRR073317	Gold flowering 3	4.944
	CRR073318	Tawny withering 1	10.057
	CRR073319	Tawny withering 2	19.612
	CRR073320	Tawny withering 3	11.889