Detail information of GWHGAAZE013001


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009802152.10PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Nicotiana sylvestris]
Swissprottr|Q96329|ACOX4_ARATH0Acyl-coenzyme A oxidase 4, peroxisomal
trEMBLtr|A0A068UE31|A0A068UE31_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06469.1}
TAIR10AT3G51840.10acyl-CoA oxidase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9508877395107930-
GWHAAZE00000003mRNA9508877395107930-
GWHAAZE00000003exon9510792195107930-
GWHAAZE00000003exon9510704295107146-
GWHAAZE00000003exon9510681395106919-
GWHAAZE00000003exon9510638295106459-
GWHAAZE00000003exon9510616995106292-
GWHAAZE00000003exon9510598995106062-
GWHAAZE00000003exon9510577895105888-
GWHAAZE00000003exon9510557795105686-
GWHAAZE00000003exon9510445595104614-
GWHAAZE00000003exon9510345795103533-
GWHAAZE00000003exon9510302395103194-
GWHAAZE00000003exon9510231395102405-
GWHAAZE00000003exon9508978295089829-
GWHAAZE00000003exon9508877395088925-
GWHAAZE00000003CDS9510792195107930-
GWHAAZE00000003CDS9510704295107146-
GWHAAZE00000003CDS9510681395106919-
GWHAAZE00000003CDS9510638295106459-
GWHAAZE00000003CDS9510616995106292-
GWHAAZE00000003CDS9510598995106062-
GWHAAZE00000003CDS9510577895105888-
GWHAAZE00000003CDS9510557795105686-
GWHAAZE00000003CDS9510445595104614-
GWHAAZE00000003CDS9510345795103533-
GWHAAZE00000003CDS9510302395103194-
GWHAAZE00000003CDS9510231395102405-
GWHAAZE00000003CDS9508978295089829-
GWHAAZE00000003CDS9508877395088925-
Transcript Sequence

Network for GWHGAAZE013001

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02771.17Acyl-CoA_dh_N501591.40E-23
PF02770.20Acyl-CoA_dh_M1652741.30E-18
PF00441.25Acyl-CoA_dh_12914061.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carbon metabolismmap01200
Fatty acid metabolismmap01212
Propanoate metabolismmap00640
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
beta-Alanine metabolismmap00410
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0050660molecular_functionflavin adenine dinucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf60.699
SRR3591706second leaf39.529
SRR3591707mature leaf53.276
SRR3591708Shoot apex44.061
SRR3591709Stem82.421
SRR3591710White floral bud146.748
SRR3591711White flower194.794
SRR3591712Green floral bud81.034
SRR3591713Yellow flower285.769
SRP173429 SRR8316895Juvenile bud stage 34.130
SRR8316896Juvenile bud stage 54.132
SRR8316897Juvenile bud stage 29.617
SRR8316894Third green stage 24.104
SRR8316900Third green stage 84.352
SRR8316901Third green stage 76.938
SRR8316898Complete white stage 80.016
SRR8316899Complete white stage 118.564
SRR8316903Complete white stage 113.559
SRR8316902Silver flowering stage160.985
SRR8316904Silver flowering stage235.996
SRR8316905Silver flowering stage140.484
SRR8316906Gold flowering stage 415.568
SRR8316907Gold flowering stage 358.258
SRR8316908Gold flowering stage 439.480
SRP132670SRR6706286Control78.633
SRR6706287Light intensity 50%77.122
SRR6706288Light intensity 20%82.418
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.321
CNS0095593Slightly white alabastrum(diploid) 231.852
CNS0095594Slightly white alabastrum(diploid) 331.834
CNS0095595Whole white alabastrum(diploid) 231.064
CNS0095596Whole white alabastrum(diploid) 330.712
CNS0095597Whole white alabastrum(diploid) 430.670
CNS0095598Silvery flower (diploied) 148.939
CNS0095599Silvery flower (diploied) 252.913
CNS0095600Silvery flower (diploied) 3206.005
CNS0095601Golden flower (diploid) 151.625
CNS0095602Golden flower (diploid) 2135.392
CNS0095603Golden flower (diploid) 3123.983
CNS0095604Slightly white alabastrum(tetraploid) 150.415
CNS0095605Slightly white alabastrum(tetraploid) 242.540
CNS0095606Slightly white alabastrum(tetraploid) 350.739
CNS0095607Whole white alabastrum(tetraploid) 140.339
CNS0095608Whole white alabastrum(tetraploid) 234.253
CNS0095609Whole white alabastrum(tetraploid) 376.633
CNS0095610Silvery flower (tetraploid) 1223.790
CNS0095611Silvery flower (tetraploid) 2288.346
CNS0095612Silvery flower (tetraploid) 3268.401
CNS0095613Golden flower (tetraploid) 1151.053
CNS0095614Golden flower (tetraploid) 2184.907
CNS0095615Golden flower (tetraploid) 3229.146
CRA001975CRR073297Stem 142.648
CRR073298Stem 243.197
CRR073299Stem 336.975
CRR073300Leaf 154.801
CRR073301Leaf 250.416
CRR073302Leaf 359.932
CRR073303Juvenile bud 165.521
CRR073304Juvenile bud 277.137
CRR073305Juvenile bud 391.215
CRR073306Third green 1182.719
CRR073307Third green 2159.024
CRR073308Third green 3195.386
CRR073309Second white 1291.304
CRR073310Second white 2194.110
CRR073311Second white 3196.516
CRR073312Silver flowering 1156.741
CRR073313Silver flowering 2172.328
CRR073314Silver flowering 3158.386
CRR073315Gold flowering 122.334
CRR073316Gold flowering 232.544
CRR073317Gold flowering 322.536
CRR073318Tawny withering 139.729
CRR073319Tawny withering 235.226
CRR073320Tawny withering 337.612