Gene detail

Detail information of GWHGAAZE013007

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264625.1	2.9802E-139	PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Nelumbo nucifera]
Swissprot	tr\|Q9FFF5\|ALFL1_ARATH	5E-116	PHD finger protein ALFIN-LIKE 1
trEMBL	tr\|V7ANT5\|V7ANT5_PHAVU	7E-137	Uncharacterized protein {ECO:0000313\|EMBL:ESW05881.1}
TAIR10	AT5G05610.2	2E-82	alfin-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95257126	95260376	-
GWHAAZE00000003	mRNA	95257126	95260376	-
GWHAAZE00000003	exon	95257126	95257377	-
GWHAAZE00000003	exon	95258114	95258234	-
GWHAAZE00000003	exon	95259212	95259434	-
GWHAAZE00000003	exon	95260138	95260170	-
GWHAAZE00000003	exon	95260292	95260376	-
GWHAAZE00000003	CDS	95260292	95260376	-
GWHAAZE00000003	CDS	95260138	95260170	-
GWHAAZE00000003	CDS	95259212	95259434	-
GWHAAZE00000003	CDS	95258114	95258234	-
GWHAAZE00000003	CDS	95257126	95257377	-

Transcript Sequence
>GWHTAAZE013021 ATGGAAATGGCTTCGATCTCTTCCAGTCCTCAAACTGTTGAAGAGATCTTCAAAGATTACAGCAACCGTCGTACTGCCATAGTTCATGTTGATGAGTTCTACGGACTCTGTGATCCAGAGAAGGAGAACTTGTGCTTGTATGGACATCCAAATGAAAGTTGGGAAGTCACTCTTCCAGCTGAGGAAGTTCCACCGGAGCTTCCTGAGCCAGCGCTTGGGATCAATTTTGCAAGAGATGGCATGCACCGTAAAGACTGGCTGTCGCTAGTAGCAGTGCACAGTGACTGTTGGCTGCTCTCTGTGGCTTTCTATCTTGGTGCCCGTCTTAATAGGAATGAAAGGAAACGATTGTTTAGCTTGATCAATGAGCTGCCCACTGTCTTCGAAGTTGTTGCAGAAAGGAAGCCTGTAAAAGAGAAGCCCAGTGTAGACAGTGGAAGCAAATCCCGTGGCAGTACAAAGAGGTCAATCGACGGACAGGTGAAACCCGTTCCAAAGCTAGCTGACGAAAATTTTGAAGAGGAAGAAGATGAACATAGTGAAACTCTATGTGGATGTTGCGGCGGAAATTACAATGCAGATGAGTTTTGGATTGGCTGCGATATATGTGAGAGGTGGTTCCATGGAAAATGCGTGAAGATAACACCTGCAAGGGCCGAGGGCATAAAACAATACAAATGCCCATCTTGCAGCATGAAGAGGGGCAGGCAGTAA

Network for GWHGAAZE013007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12165.9	Alfin	12	132	1.10E-60
PF00628.30	PHD	184	232	2.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0042393	molecular_function	histone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.559
	SRR3591706	second leaf	45.406
	SRR3591707	mature leaf	46.185
	SRR3591708	Shoot apex	62.108
	SRR3591709	Stem	89.295
	SRR3591710	White floral bud	74.171
	SRR3591711	White flower	58.390
	SRR3591712	Green floral bud	91.565
	SRR3591713	Yellow flower	49.560
SRP173429	SRR8316895	Juvenile bud stage	36.139
	SRR8316896	Juvenile bud stage	44.686
	SRR8316897	Juvenile bud stage	25.433
	SRR8316894	Third green stage	24.421
	SRR8316900	Third green stage	72.456
	SRR8316901	Third green stage	65.403
	SRR8316898	Complete white stage	35.846
	SRR8316899	Complete white stage	92.540
	SRR8316903	Complete white stage	54.759
	SRR8316902	Silver flowering stage	19.683
	SRR8316904	Silver flowering stage	26.692
	SRR8316905	Silver flowering stage	14.166
	SRR8316906	Gold flowering stage	39.370
	SRR8316907	Gold flowering stage	38.206
	SRR8316908	Gold flowering stage	47.154
SRP132670	SRR6706286	Control	126.631
	SRR6706287	Light intensity 50%	117.716
	SRR6706288	Light intensity 20%	121.083
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.362
	CNS0095593	Slightly white alabastrum(diploid) 2	67.942
	CNS0095594	Slightly white alabastrum(diploid) 3	54.175
	CNS0095595	Whole white alabastrum(diploid) 2	60.964
	CNS0095596	Whole white alabastrum(diploid) 3	59.940
	CNS0095597	Whole white alabastrum(diploid) 4	55.739
	CNS0095598	Silvery flower (diploied) 1	63.951
	CNS0095599	Silvery flower (diploied) 2	58.712
	CNS0095600	Silvery flower (diploied) 3	66.442
	CNS0095601	Golden flower (diploid) 1	55.935
	CNS0095602	Golden flower (diploid) 2	60.755
	CNS0095603	Golden flower (diploid) 3	60.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.792
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.996
	CNS0095606	Slightly white alabastrum(tetraploid) 3	86.811
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.389
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.797
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.756
	CNS0095610	Silvery flower (tetraploid) 1	43.948
	CNS0095611	Silvery flower (tetraploid) 2	52.349
	CNS0095612	Silvery flower (tetraploid) 3	26.905
	CNS0095613	Golden flower (tetraploid) 1	38.465
	CNS0095614	Golden flower (tetraploid) 2	39.555
	CNS0095615	Golden flower (tetraploid) 3	35.480
CRA001975	CRR073297	Stem 1	87.528
	CRR073298	Stem 2	88.290
	CRR073299	Stem 3	103.488
	CRR073300	Leaf 1	114.229
	CRR073301	Leaf 2	123.178
	CRR073302	Leaf 3	160.054
	CRR073303	Juvenile bud 1	138.012
	CRR073304	Juvenile bud 2	158.862
	CRR073305	Juvenile bud 3	101.488
	CRR073306	Third green 1	44.483
	CRR073307	Third green 2	70.018
	CRR073308	Third green 3	55.771
	CRR073309	Second white 1	43.787
	CRR073310	Second white 2	39.556
	CRR073311	Second white 3	29.708
	CRR073312	Silver flowering 1	20.440
	CRR073313	Silver flowering 2	24.097
	CRR073314	Silver flowering 3	16.784
	CRR073315	Gold flowering 1	64.675
	CRR073316	Gold flowering 2	59.050
	CRR073317	Gold flowering 3	56.511
	CRR073318	Tawny withering 1	101.618
	CRR073319	Tawny withering 2	97.457
	CRR073320	Tawny withering 3	115.046