Detail information of GWHGAAZE013009


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010653297.10PREDICTED: uncharacterized protein LOC100262578 [Vitis vinifera]
trEMBLtr|D7SY11|D7SY11_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22794.3}
TAIR10AT5G01400.10HEAT repeat-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9528742995306273-
GWHAAZE00000003mRNA9528742995306273-
GWHAAZE00000003exon9528742995287915-
GWHAAZE00000003exon9528800895288111-
GWHAAZE00000003exon9528875495288837-
GWHAAZE00000003exon9528892495288968-
GWHAAZE00000003exon9528916695289268-
GWHAAZE00000003exon9528971695289954-
GWHAAZE00000003exon9529066595290739-
GWHAAZE00000003exon9529139495291441-
GWHAAZE00000003exon9529152795291610-
GWHAAZE00000003exon9529257595292682-
GWHAAZE00000003exon9529278695292848-
GWHAAZE00000003exon9529324895293388-
GWHAAZE00000003exon9529355495293694-
GWHAAZE00000003exon9529378895293835-
GWHAAZE00000003exon9529481795295059-
GWHAAZE00000003exon9529541995295535-
GWHAAZE00000003exon9529651495296582-
GWHAAZE00000003exon9529791395298530-
GWHAAZE00000003exon9529910395299591-
GWHAAZE00000003exon9530023895300366-
GWHAAZE00000003exon9530150395301677-
GWHAAZE00000003exon9530363195303799-
GWHAAZE00000003exon9530419095304304-
GWHAAZE00000003exon9530438695304478-
GWHAAZE00000003exon9530521295305371-
GWHAAZE00000003exon9530606295306273-
GWHAAZE00000003CDS9530606295306273-
GWHAAZE00000003CDS9530521295305371-
GWHAAZE00000003CDS9530438695304478-
GWHAAZE00000003CDS9530419095304304-
GWHAAZE00000003CDS9530363195303799-
GWHAAZE00000003CDS9530150395301677-
GWHAAZE00000003CDS9530023895300366-
GWHAAZE00000003CDS9529910395299591-
GWHAAZE00000003CDS9529791395298530-
GWHAAZE00000003CDS9529651495296582-
GWHAAZE00000003CDS9529541995295535-
GWHAAZE00000003CDS9529481795295059-
GWHAAZE00000003CDS9529378895293835-
GWHAAZE00000003CDS9529355495293694-
GWHAAZE00000003CDS9529324895293388-
GWHAAZE00000003CDS9529278695292848-
GWHAAZE00000003CDS9529257595292682-
GWHAAZE00000003CDS9529152795291610-
GWHAAZE00000003CDS9529139495291441-
GWHAAZE00000003CDS9529066595290739-
GWHAAZE00000003CDS9528971695289954-
GWHAAZE00000003CDS9528916695289268-
GWHAAZE00000003CDS9528892495288968-
GWHAAZE00000003CDS9528875495288837-
GWHAAZE00000003CDS9528800895288111-
GWHAAZE00000003CDS9528776595287915-
GWHAAZE00000003three_prime_UTR9528742995287764-
Transcript Sequence

Network for GWHGAAZE013009

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11935.9DUF34531003186.90E-38
PF12295.9Symplekin_C105912682.70E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06100SYMPK mRNA surveillance pathway map03015
Tight junctionmap04530

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.913
SRR3591706second leaf13.870
SRR3591707mature leaf14.073
SRR3591708Shoot apex18.620
SRR3591709Stem17.536
SRR3591710White floral bud13.644
SRR3591711White flower17.448
SRR3591712Green floral bud14.180
SRR3591713Yellow flower15.467
SRP173429 SRR8316895Juvenile bud stage 7.474
SRR8316896Juvenile bud stage 11.293
SRR8316897Juvenile bud stage 7.501
SRR8316894Third green stage 4.985
SRR8316900Third green stage 11.985
SRR8316901Third green stage 11.401
SRR8316898Complete white stage 2.869
SRR8316899Complete white stage 11.466
SRR8316903Complete white stage 9.385
SRR8316902Silver flowering stage5.038
SRR8316904Silver flowering stage9.179
SRR8316905Silver flowering stage3.843
SRR8316906Gold flowering stage 12.626
SRR8316907Gold flowering stage 11.896
SRR8316908Gold flowering stage 14.839
SRP132670SRR6706286Control8.016
SRR6706287Light intensity 50%8.809
SRR6706288Light intensity 20%9.892
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.141
CNS0095593Slightly white alabastrum(diploid) 27.462
CNS0095594Slightly white alabastrum(diploid) 37.347
CNS0095595Whole white alabastrum(diploid) 25.757
CNS0095596Whole white alabastrum(diploid) 36.153
CNS0095597Whole white alabastrum(diploid) 46.773
CNS0095598Silvery flower (diploied) 111.116
CNS0095599Silvery flower (diploied) 27.717
CNS0095600Silvery flower (diploied) 314.282
CNS0095601Golden flower (diploid) 18.004
CNS0095602Golden flower (diploid) 215.282
CNS0095603Golden flower (diploid) 314.505
CNS0095604Slightly white alabastrum(tetraploid) 112.120
CNS0095605Slightly white alabastrum(tetraploid) 29.597
CNS0095606Slightly white alabastrum(tetraploid) 318.201
CNS0095607Whole white alabastrum(tetraploid) 19.316
CNS0095608Whole white alabastrum(tetraploid) 28.988
CNS0095609Whole white alabastrum(tetraploid) 314.703
CNS0095610Silvery flower (tetraploid) 119.477
CNS0095611Silvery flower (tetraploid) 219.738
CNS0095612Silvery flower (tetraploid) 316.824
CNS0095613Golden flower (tetraploid) 110.623
CNS0095614Golden flower (tetraploid) 215.610
CNS0095615Golden flower (tetraploid) 315.026
CRA001975CRR073297Stem 112.528
CRR073298Stem 210.189
CRR073299Stem 37.004
CRR073300Leaf 113.073
CRR073301Leaf 211.169
CRR073302Leaf 36.944
CRR073303Juvenile bud 17.739
CRR073304Juvenile bud 24.928
CRR073305Juvenile bud 311.258
CRR073306Third green 13.722
CRR073307Third green 22.467
CRR073308Third green 33.095
CRR073309Second white 13.598
CRR073310Second white 25.429
CRR073311Second white 36.939
CRR073312Silver flowering 16.178
CRR073313Silver flowering 26.291
CRR073314Silver flowering 36.884
CRR073315Gold flowering 12.263
CRR073316Gold flowering 25.685
CRR073317Gold flowering 32.857
CRR073318Tawny withering 17.097
CRR073319Tawny withering 28.008
CRR073320Tawny withering 38.225